We designed an interactive RNA-seq analysis toolkit based on R Shiny package, named QRAP (Quick RNA-seq Analysis Platform), which can easily accomplish RNA-seq data analysis and visualization through an intuitive graphical interface on the web page. As a comprehensive RNA-seq analysis tool, QRAP can support to analyze publicly available and user-generated data, which include regular RNA-seq data, time-course RNA-seq, data and clinically relevant RNA-seq data, and provide function annotation for approximately 500 species.
1.QRAP workflow
- R (>= 3.5.2)
- STRINGdb (>= 2.3.0)
- DOSE (>= 3.16.0)
- enrichplot (>= 1.10.0)
- fgsea (>= 1.16.0)
- clusterProfiler (>= 3.18.0)
Unpredictable errors may occur if these packages are lower than the specified version
Install the QRAP from github:
## install.packages("devtools") ## you may need install devtools first
devtools::install_github("gsx-ucas/QRAP")
library(QRAP)
startQRAP()
The documentation is available at here , the doc include a tutorial and example gallery.