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my working directory where I run IPSA pipeline is located directly on my home directory.
While trying to run the IPSA pipeline I got the following error:
command run : ./nextflow run guigolab/ipsa-nf
Success : false
workDir : /home/jelhasnaoui/IPSA/work
exit status : 127
Error report: Error executing process > 'aggregateSSJ (E14_rep2.A02.ssj)'
Caused by:
Process aggregateSSJ (E14_rep2.A02.ssj) terminated with an error exit status (127)
Command executed:
aggregate.awk -v degree=1 -v readLength= -v margin=5 -v prefix= -v logfile=E14_rep2.A02.ssj.log E14_rep2.A01.ssj.tsv > E14_rep2.A02.ssj.tsv
Command exit status:
127
Command output:
(empty)
Command error:
.command.sh: line 2: aggregate.awk: command not found
Work dir:
/home/jelhasnaoui/IPSA/work/93/81fb6b38edf80890ad1b622455d148
Tip: view the complete command output by changing to the process work dir and entering the command cat .command.out
WARN: Killing pending tasks (7)
Error executing process > 'aggregateSSJ (E14_rep2.A02.ssj)'
Caused by:
Process aggregateSSJ (E14_rep2.A02.ssj) terminated with an error exit status (127)
Command executed:
aggregate.awk -v degree=1 -v readLength= -v margin=5 -v prefix= -v logfile=E14_rep2.A02.ssj.log E14_rep2.A01.ssj.tsv > E14_rep2.A02.ssj.tsv
Command exit status:
127
Command output:
(empty)
Command error:
.command.sh: line 2: aggregate.awk: command not found
Work dir:
/home/jelhasnaoui/IPSA/work/93/81fb6b38edf80890ad1b622455d148
Tip: view the complete command output by changing to the process work dir and entering the command cat .command.out
The error says that the aggregate.awk command is not found, like if the program is not able to recognize it.
Could you please help me to fix this issue?
Thank you in advance!
Best regards,
Jamal.
The text was updated successfully, but these errors were encountered:
Hi dear,
my working directory where I run IPSA pipeline is located directly on my home directory.
While trying to run the IPSA pipeline I got the following error:
command run : ./nextflow run guigolab/ipsa-nf
Success : false
workDir : /home/jelhasnaoui/IPSA/work
exit status : 127
Error report: Error executing process > 'aggregateSSJ (E14_rep2.A02.ssj)'
Caused by:
Process
aggregateSSJ (E14_rep2.A02.ssj)
terminated with an error exit status (127)Command executed:
aggregate.awk -v degree=1 -v readLength= -v margin=5 -v prefix= -v logfile=E14_rep2.A02.ssj.log E14_rep2.A01.ssj.tsv > E14_rep2.A02.ssj.tsv
Command exit status:
127
Command output:
(empty)
Command error:
.command.sh: line 2: aggregate.awk: command not found
Work dir:
/home/jelhasnaoui/IPSA/work/93/81fb6b38edf80890ad1b622455d148
Tip: view the complete command output by changing to the process work dir and entering the command
cat .command.out
WARN: Killing pending tasks (7)
Error executing process > 'aggregateSSJ (E14_rep2.A02.ssj)'
Caused by:
Process
aggregateSSJ (E14_rep2.A02.ssj)
terminated with an error exit status (127)Command executed:
aggregate.awk -v degree=1 -v readLength= -v margin=5 -v prefix= -v logfile=E14_rep2.A02.ssj.log E14_rep2.A01.ssj.tsv > E14_rep2.A02.ssj.tsv
Command exit status:
127
Command output:
(empty)
Command error:
.command.sh: line 2: aggregate.awk: command not found
Work dir:
/home/jelhasnaoui/IPSA/work/93/81fb6b38edf80890ad1b622455d148
Tip: view the complete command output by changing to the process work dir and entering the command
cat .command.out
The error says that the aggregate.awk command is not found, like if the program is not able to recognize it.
Could you please help me to fix this issue?
Thank you in advance!
Best regards,
Jamal.
The text was updated successfully, but these errors were encountered: