Revert "changed retrieve_models logic" #553
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Reverts #543
As discussed with @amjjbonvin and @rvhonorato it is better not to change this and stick to the original haddock2.4 logic, namely each input pdb must correspond to a single chain (except for scoring modules). In this way a complex can be refined by providing its chains separately.
#482 must take this into account when rebuilding the topologies of the models generated by openmm.