Glycan 1 6

[amjjbonvin]

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Parameters and glycans-related updates. Brings the topo/param files in line with the 2.X version
Solves issues #673 #699 and #709

[amjjbonvin]

PS: Also minor updates to some examples

[codecov]

Codecov Report

All modified lines are covered by tests ✅

Comparison is base (51f6d42) 74.97% compared to head (49eed1e) 74.97%.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #714   +/-   ##
=======================================
  Coverage   74.97%   74.97%           
=======================================
  Files         113      113           
  Lines        8048     8048           
=======================================
  Hits         6034     6034           
  Misses       2014     2014           

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