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This page lists publications using ggplot2 in their graphics.

Psychology

Takahashi, K., Fukuda, H., Ikeda, H., Doi, H., Watanabe, K., Ueda, K., & Shinohara, K. (2011). Roles of the upper and lower bodies in direction discrimination of point-light walkers Journal of vision, 11(14), 1–13. doi:10.1167/11.14.8 full text (open access)

Takahashi, K., & Watanabe, K. (2011) Visual and Auditory Influence on Perceptual Stability in Visual Competition. Seeing and Perceiving, 24(6), 545-564. http://www.ncbi.nlm.nih.gov/pubmed/21902880

Takahashi K, Niimi R, Watanabe K, 2010, "Illusory motion induced by blurred red – blue edges" Perception 39(12) 1678 – 1680 http://www.perceptionweb.com/abstract.cgi?id=p6811

Dubois, M., Kyllingsbæk, S., Prado, C., Musca, S. C., Peiffer, E., Lassus-Sangosse, D., et al. (2010). Fractionating the multi-character processing deficit in developmental dyslexia: Evidence from two case studies. Cortex, 46, 717-38.

JW MacLeod, MA Lawrence, MM McConnell, GA Eskes, RM Klein, DI Shore (2010). Appraising the ANT: Psychometric and theoretical considerations of the Attention Network Test. Neuropsychology, 24, 637-651.

MA Lawrence (In Press). Estimating the probability and fidelity of memory. Behavior Research Methods.

R. Kliegl, M. Rolfs, J. Laubrock, and R. Engbert. Microsaccadic modulation of response times in spatial attention tasks. Psychological Research, 2009.

E. Tubau and J. López-Moliner. Knowing what to respond in the future does not cancel the influence of past events. PLoS ONE, 4(5), 05 2009. 10.1371/journal.pone.0005607.

R. Kliegl, M. Masson, and E Richter (2009). A linear mixed model analysis of masked repetition priming. Visual Cognition, 18(5), 655–681.

Norris et al. (2010) Habitat patch size modulates terrestrial mammal activity patterns in Amazonian forest fragments. Journal of Mammalogy, 91(3), 551-560; doi: 10.1644/09-MAMM-A-199.1.

Physics

C. Charrier, L. T. Maloney, H. Cherifi, and K. Knoblauch. Maximum likelihood difference scaling of image quality in compression-degraded images. Journal of the Optical Society of America, 24 (11):3418–3426, 2007.

B. Auguié. Optical properties of gold nanostructures. PhD thesis. School of Physics, University of Exeter, UK (2009).

B. Auguié, X.M. Bendaña, W.L. Barnes, F.J. García de Abajo. Diffractive arrays of gold nanoparticles near an interface: critical role of the substrate. Physical Review B 82, 155447 (2010).

B. Auguié, J.L. Alonso-Gómez, A. Guerrero-Martínez, and L.M. Liz-Marzán Fingers Crossed: Optical Activity of a Chiral Dimer of Plasmonic Nanorods J. Phys. Chem. Lett., 2, pp 846–851 (2011)

A. Sukhovich, J.-O. Irisson, F.J. Simons, A. Ogé, Y. Hello, A. Deschamps, and G. Nolet. Automatic discrimination of underwater acoustic signals generated by teleseismic P-waves: A probabilistic approach Geophysical Research Letters, 38(L18605), 2011.

S.A. Meyer, B. Auguié, E.C. Le Ru, and P.G. Etchegoin Combined SPR and SERS Microscopy in the Kretschmann Configuration The Journal of Physical Chemistry A 116 (3), pp 1000-1007 (2012)

W.R.C. Somerville, B. Auguié, E.C. Le Ru, Severe loss of precision in calculations of T-matrix integrals, JQSRT, (2012)

Biology

B.Reddy, D.Kallifidas, J.Kim, Z.Charlop-Powers, Z.Feng and S.Brady (2012). Natural Product Biosynthetic Gene Diversity in Geographically Distinct Soil Microbiomes. Applied and Environmental Microbiology

Wolen, A.R., Phillips, C.A., Langston, M.A., Putman, A.H., Vorster, P.J., Bruce, N.A., York, T.P., Williams, R.W., and Miles, M.F. (2012). Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications. PLoS ONE 7, e33575.

H. Roy, T. Adriaens, N. Isaac, M. Kenis, T. Onkelinx, G. San Martin, P. Brown, L. Hautier, R. Poland, D. Roy, R. Comont, R. Eschen, R. Frost, R. Zindel, J. Van Vlaenderen, O. Nedved, H. Ravn, J.C. Grégoire, J.-C. de Biseau, D. Maes. Invasive alien predator causes rapid declines of native European ladybirds. Diversity and Distributions 2012 (1-9) http://onlinelibrary.wiley.com/doi/10.1111/j.1472-4642.2012.00883.x/pdf

J.H. Koschwanez, K.R. Foster, A.W. Murray. Sucrose Utilization in Budding Yeast as a Model for the Origin of Undifferentiated Multicellularity. PLoS Biology 9(8): e1001122, 2011.

S. Bruckner, L. Wang, R. Yuan, P. Haaland, and A. Gaur. Flow-Based Combinatorial Antibody Profiling: An Integrated Approach to Cell Characterization. Flow Cytometry Protocols, Methods in Molecular Biology, vol. 699, T. S. Hawley and Robert G. Hawley (eds.), Springer. 97-118, 2010.

O. Chiba-Falek, M. Nichols, S. Suchindran, J. R. Guyton, G. S. Ginsburg, E. Barrett-Connor, and J. J. McCarthy. Sex-specific effects of scavenger receptor class b type 1 (sr-bi) gene variants on serum lipid levels and hepatic gene expression. BMC Medical Genetics, 11(9), 2010.

S. Escobar, and J.P. Kelley. Neighbor-stranger song discrimination in male song wrens (Cyphorhinus phaeocephalus). 25th International Ornithological Congress, 2010; Campos do Jordão, Brasil. Poster presentation.

L. Gatto and K.S. Lilley. Towards reproducible MSMS data preprocessing, quality control and quantification. BSPR/EBI Proteomics Meeting, 13-15 July 2010; Hinxton, United Kingdom. Poster presentation.

K. Middleton, M. Conners, and S. Swartz. Variation in rachis cross-sectional geometry within and among feather in the barn owl (tyto alba). In Integrative and Comparative Biology 49 (supplement 1): e273, 2009. Poster presentation.

R. W. Stahlhut, W. V. Welshons, and S. H. Swan. Bisphenol a data in NHANES suggest longer than expected half-life, substantial non-food exposure, or both. Environmental Health Perspectives, 2009.

S. Suchindran, A. M. Vana, R. A. Shaffer, J. E. Alcaraz, and J. J. McCarthy. Racial differences in the interaction between family history and risk factors associated with diabetes in the national health and nutritional examination survey, 1999–2004. Genetics in Medicine, 11(7), 2009.

S. Suchindran, D. Rivedal, J. R. Guyton, T. Milledge, X. Gao, A. Benjamin, J. Rowell, G. S. Ginsburg, and J. J. McCarthy. Genome-wide association study of lp-pla 2 activity and mass in the framingham heart study. PLoS Genet, 6(4), 04 2010. 10.1371/journal.pgen.1000928.

S. Vuilleumier, B. M. Bolker, and O. Lévêque. 2010. Effects of colonization asymmetries on metapopulation persistence. Theoretical Population Biology 78, no. 3 (November): 225-238. doi:10.1016/j.tpb.2010.06.007.

Economics

J. J. Horton. The condition of the turking class: Are online employers fair and honest? 2010.

Sharad Goel, Jake M. Hofman, Sébastien Lahaie, David M. Pennock. [P

Chemistry

C. Beleites, K. Geiger, M. Kirsch, S. B. Sobottka, G. Schackert and R. Salzer: Raman spectroscopic grading of astrocytoma tissues: using soft reference information. Anal Bioanal Chem, 400, 2801-2816 (2011). doi: 10.1007/s00216-011-4985-4

Ecology & Environment

R. W. Battarbee, G. L. Simpson, H. Bennion, & C. J. Curtis (2011) A reference typology of upland lakes in the UK based on pre-acidification diatom assemblages from lake sediment cores. Journal of Paleolimnology 45(4), 489–505. doi: 10.1007/s10933-010-9426-4

C. J. Curtis, T. H. E. Heaton, G. L. Simpson, C. D. Evans, J. Shilland, & S. D. Turner (in press) Dominance of biologically produced nitrate in upland waters of Great Britain indicated by stable isotopes. Biogeochemistry. doi: 10.1007/s10533-011-9686-8

J.-O. Irisson, C. Guigand, and C. B. Paris. Detection and quantification of marine larvae orientation in the pelagic environment. Limnology and Oceanography: Methods, 7:664-672, 2009.

J.-O. Irisson, C. B. Paris, C. Guigand, and S. Planes. Ontogenetic vertical “migration” in fish larvae: description and consequences for dispersal. Limnology & Oceanography, 55(2):909-919, 2010.

N. L. Rose, H. Yang, S. D. Turner, & G. L. Simpson (2012) An assessment of the mechanisms for the transfer of lead and mercury from atmospherically contaminated soils to lake sediments with particular reference to Scotland, UK. Geochimica et Cosmochimica Acta 82, 113–135. doi: 10.1016/j.gca.2010.12.026

Dugaw, C.J. & Ram, K. Individual heterogeneity in mortality mediates long-term persistence of a seasonal microparasite. Oecologia 166-166, 317-325 (2011). doi: 10.1007/s00442-010-1844-5

Marwick, B. & M. Gagan (2011) Late Pleistocene monsoon variability in northwest Thailand: an oxygen isotope sequence from the bivalve Margaritanopsis laosensis excavated in Mae Hong Son province. Quaternary Science Reviews Volume 30, Issues 21–22, Pages 3088–3098. doi: 10.1016/j.quascirev.2011.07.007

S. A. Chamberlain, S. M. Hovick, C. J. Dibble, N. L. Rasmussen, B. G. Van Allen, B. S. Maitner, J. R. Ahern, L. P. Bell-Dereske, C. L. Roy, M. Meza-Lopez, J. Carrillo, E. Siemann, M. J. Lajeunesse, K. D. Whitney. 2012. Does phylogeny matter? Assessing the impact of phylogenetic information in ecological meta-analysis. Ecology Letters, doi: 10.1111/j.1461-0248.2012.01776.x

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