1.2.0-M1

hammerlab · Mar 17, 2018 · 127baaa · 127baaa
1 parent 38577cb
commit 127baaa
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Showing 5 changed files with 11 additions and 11 deletions.
diff --git a/build.sbt b/build.sbt
@@ -5,7 +5,7 @@ import genomics.{ loci, reference }
 default(
   group("org.hammerlab.bam"),
   github.repo("spark-bam"),
-  v"1.2.0",
+  v"1.2.0-M1",
   versions(
                    bytes → "1.2.0"          ,
                 case_cli → "2.3.0"          ,
@@ -161,7 +161,7 @@ lazy val seqdoop = project.settings(
 
 lazy val test_bams = project.settings(
   name := "test-bams",
-  v"1.1.0",
+  v"1.1.0-M1",
   scala211Only,
   dep(
     paths,

diff --git a/cli/src/main/scala/org/hammerlab/bam/Main.scala b/cli/src/main/scala/org/hammerlab/bam/Main.scala
@@ -31,7 +31,7 @@ object Main
   extends CommandApp[Command[Cmd]] {
 
   override val    appName = "spark-bam"
-  override val appVersion = "1.2.0"
+  override val appVersion = "1.2.0-M1"
   override val   progName = "spark-bam"
 
   override def run(cmd: Command[Cmd],

diff --git a/cli/src/test/scala/org/hammerlab/bam/MainTest.scala b/cli/src/test/scala/org/hammerlab/bam/MainTest.scala
@@ -56,7 +56,7 @@ class MainTest
     check(
       "-h"
     )(
-      """spark-bam 1.2.0
+      """spark-bam 1.2.0-M1
         |Usage: spark-bam [options] [command] [command-options]
         |
         |Available commands: check-bam, check-blocks, compare-splits, compute-splits, count-reads, full-check, htsjdk-rewrite, index-blocks, index-records, time-load

diff --git a/docs/command-line.md b/docs/command-line.md
@@ -23,15 +23,15 @@ The latter are typically most easily run via `spark-submit` anyway, as in exampl
 ### Via Maven
 
 ```bash
-wget -O spark-bam-cli.jar https://oss.sonatype.org/content/repositories/releases/org/hammerlab/bam/cli_2.11/1.2.0/cli_2.11-1.2.0-assembly.jar
+wget -O spark-bam-cli.jar https://oss.sonatype.org/content/repositories/releases/org/hammerlab/bam/cli_2.11/1.2.0-M1/cli_2.11-1.2.0-M1-assembly.jar
 export CLI_JAR=spark-bam-cli.jar
 ```
 
 ### From source
 
 ```bash
 sbt cli/assembly
-export CLI_JAR=cli/target/scala-2.11/cli-assembly-1.2.0.jar
+export CLI_JAR=cli/target/scala-2.11/cli-assembly-1.2.0-M1.jar
 ```
 
 ## Running a subcommand

diff --git a/docs/index.md b/docs/index.md
@@ -1,7 +1,7 @@
 Process [BAM files][SAM spec] using [Apache Spark] and [HTSJDK]; inspired by [hadoop-bam].
 
 ```bash
-$ spark-shell --packages=org.hammerlab.bam:load_2.11:1.2.0
+$ spark-shell --packages=org.hammerlab.bam:load_2.11:1.2.0-M1
 ```
 ```scala
 import spark_bam._, hammerlab.path._
@@ -31,7 +31,7 @@ sc.loadBamIntervals(path)("1:13000-14000", "1:60000-61000").count
 ### SBT
 
 ```scala
-libraryDependencies += "org.hammerlab.bam" %% "load" % "1.2.0"
+libraryDependencies += "org.hammerlab.bam" %% "load" % "1.2.0-M1"
 ```
 
 ### Maven
@@ -40,14 +40,14 @@ libraryDependencies += "org.hammerlab.bam" %% "load" % "1.2.0"
 <dependency>
   <groupId>org.hammerlab.bam</groupId>
   <artifactId>load_2.11</artifactId>
-  <version>1.2.0</version>
+  <version>1.2.0-M1</version>
 </dependency>
 ```
 
 ### From `spark-shell`
 
 ```bash
-spark-shell --packages=org.hammerlab.bam:load:1.2.0
+spark-shell --packages=org.hammerlab.bam:load:1.2.0-M1
 ```
 
 ### On Google Cloud
@@ -64,7 +64,7 @@ wget https://oss.sonatype.org/content/repositories/releases/com/google/cloud/goo
 Then include it in your `--jars` list when running `spark-shell` or `spark-submit`:
 
 ```bash
-spark-shell --jars $GOOGLE_CLOUD_NIO_JAR --packages=org.hammerlab.bam:load:1.2.0
+spark-shell --jars $GOOGLE_CLOUD_NIO_JAR --packages=org.hammerlab.bam:load:1.2.0-M1
 …
 import spark_bam._, hammerlab.path._