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Provide an option to filter out probes according their SNP status #24

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PoGibas opened this issue Jun 22, 2015 · 1 comment
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@PoGibas
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PoGibas commented Jun 22, 2015

In your compartments paper you filtered out SNPs according their minor allele frequencies. It would be great to have such option in minfi, next to openSea argument.

@Jfortin1
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This is already implemented in minfi -- see the example code below:

object <- dropLociWithSnps(object, snps = c("CpG", "SBE"), maf = 0.01)

@PoGibas PoGibas closed this as completed Jun 22, 2015
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