Code for macaque visual cortex cell atlas.
Comprehensive whole-cell profiling of primate primary visual cortex unveils new cell types and species differences in gene expression Jia-Ru Wei1, Zhao-Zhe Hao1, Chuan Xu, Mengyao Huang, Lei Tang, Nana Xu, Ruifeng Liu, Yuhui Shen, Sarah A. Teichmann*, Zhichao Miao*, Sheng Liu*
Code The code for generating each figure has been uploaded.
The majority of the analyses and data preprocessing followed the standard analysis pipline.
Addition analysis have been provided in the scctools.py file.
The codes will also be updated based on the correspondences received.
DATA Expression matrix and the metadata are publicly available in arrayExpress with the accession number:
E-MTAB-10459 (Macaque V1 10X genomics dataset)
E-MTAB- (Macaque V1 patch-seq dataset).
The raw sequencing files (fastq) are partially public available with the same accession numbers due to the large size.
The full raw sequencing files is available upon reasonable request to the authors.