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Create workflows #32
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Create workflows #32
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Create black.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| name: black | ||
|
|
||
| on: pull_request | ||
|
|
||
| jobs: | ||
| pre-commit: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/setup-python@v2 | ||
| - uses: pre-commit/action@v2.0.3 | ||
| with: | ||
| extra_args: black | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| name: Check Sphinx external links | ||
| on: | ||
| pull_request: | ||
| schedule: | ||
| - cron: '0 5 * * *' # once per day at midnight ET | ||
| workflow_dispatch: | ||
|
|
||
| jobs: | ||
| check-external-links: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Cancel any previous incomplete runs | ||
| uses: styfle/cancel-workflow-action@0.9.1 | ||
| with: | ||
| all_but_latest: true | ||
| access_token: ${{ github.token }} | ||
|
|
||
| - uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: '3.10' | ||
|
|
||
| - name: Install Sphinx dependencies and package | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install -r requirements-doc.txt -r requirements.txt | ||
| python -m pip install . | ||
| - name: Check Sphinx external links | ||
| run: sphinx-build -b linkcheck ./docs/source ./test_build |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,54 @@ | ||
| name: Deploy release | ||
| on: | ||
| push: | ||
| tags: # run only on new tags that follow semver MAJOR.MINOR.PATCH | ||
| - '[0-9]+.[0-9]+.[0-9]+' | ||
|
|
||
| jobs: | ||
| deploy-release: | ||
| name: Deploy release from tag | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout repo with submodules | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
| fetch-depth: 0 # tags are required for versioneer to determine the version | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: '3.10' | ||
|
|
||
| - name: Install build dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install tox | ||
| python -m pip list | ||
| - name: Run tox tests | ||
| run: | | ||
| tox -e py310-upgraded | ||
| - name: Build wheel and source distribution | ||
| run: | | ||
| tox -e build-py310-upgraded | ||
| ls -1 dist | ||
| - name: Test installation from a wheel | ||
| run: | | ||
| tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl | ||
| - name: Upload wheel and source distributions to PyPI | ||
| run: | | ||
| python -m pip install twine | ||
| ls -1 dist | ||
| # twine upload --repository testpypi -u ${{ secrets.BOT_PYPI_USER }} -p ${{ secrets.BOT_PYPI_PASSWORD }} --skip-existing dist/* | ||
| twine upload -u ${{ secrets.BOT_PYPI_USER }} -p ${{ secrets.BOT_PYPI_PASSWORD }} --skip-existing dist/* | ||
| - name: Publish wheel and source distributions as a GitHub release | ||
| run: | | ||
| # use click<8 until https://github.com/j0057/github-release/issues/62 is resolved | ||
| python -m pip install "click<8" githubrelease | ||
| githubrelease --github-token ${{ secrets.BOT_GITHUB_TOKEN }} release hdmf-dev/hdmf \ | ||
| create ${{ github.ref_name }} --name ${{ github.ref_name }} \ | ||
| --publish | ||
| # upload assets in a separate command until https://github.com/j0057/github-release/issues/67 is resolved | ||
| githubrelease --github-token ${{ secrets.BOT_GITHUB_TOKEN }} asset hdmf-dev/hdmf \ | ||
| upload ${{ github.ref_name }} \ | ||
| --publish dist/* |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,168 @@ | ||
| name: Run all tests | ||
| on: | ||
| schedule: | ||
| - cron: '0 5 * * *' # once per day at midnight ET | ||
| push: | ||
| tags: # run only on new tags that follow semver | ||
| - '/^[0-9]+(\.[0-9]+)?(\.[0-9]+)?$/' | ||
| workflow_dispatch: | ||
|
|
||
| jobs: | ||
| run-all-tests: | ||
| # the only differences between this job and "run_tests.yml" is the "strategy.matrix.include" and the upload | ||
| # distributions step. | ||
| # GitHub Actions does not yet support YAML anchors, easily reusable components, or easy dynamic matrix | ||
| # configurations based on the github event, so this job is duplicated for the most part | ||
| name: ${{ matrix.name }} | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - { name: linux-python3.7-minimum , test-tox-env: py37-minimum , build-tox-env: build-py37-minimum , python-ver: "3.7" , os: ubuntu-latest } | ||
| - { name: linux-python3.7 , test-tox-env: py37 , build-tox-env: build-py37 , python-ver: "3.7" , os: ubuntu-latest } | ||
| - { name: linux-python3.8 , test-tox-env: py38 , build-tox-env: build-py38 , python-ver: "3.8" , os: ubuntu-latest } | ||
| - { name: linux-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: ubuntu-latest } | ||
| - { name: linux-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-optional , test-tox-env: py310-optional , build-tox-env: build-py310-optional , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-upgraded , test-tox-env: py310-upgraded , build-tox-env: build-py310-upgraded , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-prerelease , test-tox-env: py310-prerelease, build-tox-env: build-py310-prerelease, python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: windows-python3.7-minimum , test-tox-env: py37-minimum , build-tox-env: build-py37-minimum , python-ver: "3.7" , os: windows-latest } | ||
| - { name: windows-python3.7 , test-tox-env: py37 , build-tox-env: build-py37 , python-ver: "3.7" , os: windows-latest } | ||
| - { name: windows-python3.8 , test-tox-env: py38 , build-tox-env: build-py38 , python-ver: "3.8" , os: windows-latest } | ||
| - { name: windows-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: windows-latest } | ||
| - { name: windows-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: windows-latest } | ||
| - { name: windows-python3.10-optional , test-tox-env: py310-optional , build-tox-env: build-py310-optional , python-ver: "3.10", os: windows-latest } | ||
| - { name: windows-python3.10-upgraded , test-tox-env: py310-upgraded , build-tox-env: build-py310-upgraded , python-ver: "3.10", os: windows-latest } | ||
| - { name: windows-python3.10-prerelease, test-tox-env: py310-prerelease, build-tox-env: build-py310-prerelease, python-ver: "3.10", os: windows-latest } | ||
| - { name: macos-python3.7-minimum , test-tox-env: py37-minimum , build-tox-env: build-py37-minimum , python-ver: "3.7" , os: macos-latest } | ||
| - { name: macos-python3.7 , test-tox-env: py37 , build-tox-env: build-py37 , python-ver: "3.7" , os: macos-latest } | ||
| - { name: macos-python3.8 , test-tox-env: py38 , build-tox-env: build-py38 , python-ver: "3.8" , os: macos-latest } | ||
| - { name: macos-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: macos-latest } | ||
| - { name: macos-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: macos-latest } | ||
| - { name: macos-python3.10-optional , test-tox-env: py310-optional , build-tox-env: build-py310-optional , python-ver: "3.10", os: macos-latest } | ||
| - { name: macos-python3.10-upgraded , test-tox-env: py310-upgraded , build-tox-env: build-py310-upgraded , python-ver: "3.10", os: macos-latest } | ||
| - { name: macos-python3.10-prerelease , test-tox-env: py310-prerelease, build-tox-env: build-py310-prerelease, python-ver: "3.10", os: macos-latest } | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: ${{ matrix.python-ver }} | ||
|
|
||
| - name: Install build dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install tox | ||
| python -m pip list | ||
| - name: Run tox tests | ||
| run: | | ||
| tox -e ${{ matrix.test-tox-env }} | ||
| - name: Build wheel and source distribution | ||
| run: | | ||
| tox -e ${{ matrix.build-tox-env }} | ||
| ls -1 dist | ||
| - name: Test installation from a wheel | ||
| run: | | ||
| tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl | ||
| run-all-gallery-tests: | ||
| name: ${{ matrix.name }} | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - { name: linux-gallery-python3.7-minimum , test-tox-env: gallery-py37-minimum , python-ver: "3.7" , os: ubuntu-latest } | ||
| - { name: linux-gallery-python3.10-upgraded , test-tox-env: gallery-py310-upgraded , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-gallery-python3.10-prerelease , test-tox-env: gallery-py310-prerelease, python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: windows-gallery-python3.7-minimum , test-tox-env: gallery-py37-minimum , python-ver: "3.7" , os: windows-latest } | ||
| - { name: windows-gallery-python3.10-upgraded , test-tox-env: gallery-py310-upgraded , python-ver: "3.10", os: windows-latest } | ||
| - { name: windows-gallery-python3.10-prerelease, test-tox-env: gallery-py310-prerelease, python-ver: "3.10", os: windows-latest } | ||
| - { name: macos-gallery-python3.7-minimum , test-tox-env: gallery-py37-minimum , python-ver: "3.7" , os: macos-latest } | ||
| - { name: macos-gallery-python3.10-upgraded , test-tox-env: gallery-py310-upgraded , python-ver: "3.10", os: macos-latest } | ||
| - { name: macos-gallery-python3.10-prerelease , test-tox-env: gallery-py310-prerelease, python-ver: "3.10", os: macos-latest } | ||
| steps: | ||
| - name: Cancel any previous incomplete runs | ||
| uses: styfle/cancel-workflow-action@0.9.1 | ||
| with: | ||
| access_token: ${{ github.token }} | ||
|
|
||
| - uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: ${{ matrix.python-ver }} | ||
|
|
||
| - name: Install build dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install tox | ||
| python -m pip list | ||
| - name: Run tox tests | ||
| run: | | ||
| tox -e ${{ matrix.test-tox-env }} | ||
| run-all-tests-on-conda: | ||
| name: ${{ matrix.name }} | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} # needed for conda environment to work | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - { name: linux-python3.7-minimum , test-tox-env: py37-minimum , build-tox-env: build-py37-minimum , python-ver: "3.7" , os: ubuntu-latest } | ||
| - { name: linux-python3.7 , test-tox-env: py37 , build-tox-env: build-py37 , python-ver: "3.7" , os: ubuntu-latest } | ||
| - { name: linux-python3.8 , test-tox-env: py38 , build-tox-env: build-py38 , python-ver: "3.8" , os: ubuntu-latest } | ||
| - { name: linux-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: ubuntu-latest } | ||
| - { name: linux-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-optional , test-tox-env: py310-optional , build-tox-env: build-py310-optional , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-upgraded , test-tox-env: py310-upgraded , build-tox-env: build-py310-upgraded , python-ver: "3.10", os: ubuntu-latest } | ||
| - { name: linux-python3.10-prerelease, test-tox-env: py310-prerelease, build-tox-env: build-py310-prerelease, python-ver: "3.10", os: ubuntu-latest } | ||
| steps: | ||
| - name: Cancel any previous incomplete runs | ||
| uses: styfle/cancel-workflow-action@0.9.1 | ||
| with: | ||
| access_token: ${{ github.token }} | ||
|
|
||
| - uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
|
|
||
| - name: Set up Conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| auto-update-conda: true | ||
| auto-activate-base: true | ||
| activate-environment: "" | ||
|
|
||
| - name: Install build dependencies | ||
| run: | | ||
| conda update -n base -c defaults conda | ||
| conda config --set always_yes yes --set changeps1 no | ||
| conda config --add channels conda-forge | ||
| conda install python=${{ matrix.python-ver }} | ||
| conda install tox | ||
| conda list | ||
| - name: Run tox tests | ||
| run: | | ||
| tox -e ${{ matrix.test-tox-env }} | ||
| - name: Build wheel and source distribution | ||
| run: | | ||
| tox -e ${{ matrix.build-tox-env }} | ||
| ls -1 dist | ||
| - name: Test installation from a wheel | ||
| run: | | ||
| tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| name: Run code coverage | ||
| on: | ||
| push: | ||
| branches: | ||
| - dev | ||
| tags-ignore: # exclude tags created by "ci_addons publish_github_release" | ||
| - 'latest' | ||
| - 'latest-tmp' | ||
| pull_request: | ||
| workflow_dispatch: | ||
|
|
||
| jobs: | ||
| run-coverage: | ||
| name: ${{ matrix.os }}, opt reqs ${{ matrix.opt_req }} | ||
| runs-on: ${{ matrix.os }} | ||
| # TODO | ||
| # run pipeline on either a push event or a PR event on a fork | ||
| # if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| strategy: | ||
| matrix: | ||
| include: | ||
| - { os: ubuntu-latest , opt_req: true } | ||
| - { os: ubuntu-latest , opt_req: false } | ||
| - { os: windows-latest, opt_req: false } | ||
| - { os: macos-latest , opt_req: false } | ||
| env: | ||
| OS: ${{ matrix.os }} | ||
| PYTHON: '3.10' | ||
| steps: | ||
| - name: Cancel any previous incomplete runs | ||
| uses: styfle/cancel-workflow-action@0.9.1 | ||
| with: | ||
| all_but_latest: true | ||
| access_token: ${{ github.token }} | ||
|
|
||
| - uses: actions/checkout@v3 | ||
| with: | ||
| submodules: 'recursive' | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: '3.10' | ||
|
|
||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install -r requirements-dev.txt -r requirements.txt | ||
|
|
||
| - name: Install package | ||
| run: | | ||
| python -m pip install -e . # must install in editable mode for coverage to find sources | ||
| python -m pip list | ||
| - name: Run tests and generate coverage report | ||
| run: | | ||
| python -m coverage run test.py -u | ||
| python -m coverage xml # codecov uploader requires xml format | ||
| python -m coverage report -m | ||
| - name: Upload coverage to Codecov | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| fail_ci_if_error: true |
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These actions have newer versions. Can you update these?