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Core developer of Neurodata Without Borders

21 followers · 8 following

nwb.org

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NeurodataWithoutBorders/pynwb Public

A Python API for working with Neurodata stored in the NWB Format

Python 125 68
NeurodataWithoutBorders/pynwb-course Public

Interactive Python course for using the Neurodata Without Borders format

CSS 8 1
PrincetonUniversity/pul-lip-v4-paper-code Public

MATLAB
simple-mua-detection Public

MATLAB script to detect spikes in high-pass filtered ephys data (Plexon PL2 format) using adaptive amplitude thresholding

MATLAB 4
PoGo-Raid-Organizer Public

JavaScript 1

762 contributions in the last year

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Contribution activity

May 2022

Created 15 commits in 4 repositories

Created a pull request in hdmf-dev/hdmf that received 4 comments

Warn when using positional args in data type class init

Motivation First step toward resolving NeurodataWithoutBorders/pynwb#1189 . See that issue ticket for more motivation and background. This PR makes _…

+270 −243 • 4 comments

Opened 12 other pull requests in 5 repositories

hdmf-dev/hdmf 1 open 5 merged

Remove debugging for uploading to pypi May 20
Fix githubrelease in deploy CI May 19
Fix CI issues May 19
Allow write_args=None to be passed to HDF5IO.export May 17
Add utility function for popping docval args into a dict May 17
Prepare for HDMF 3.3.0 release May 10

NeurodataWithoutBorders/nwb-schema 3 merged

LorenFrankLab/spyglass 1 merged

Update tests to use kachery-cloud and updated beans test file May 19

NeurodataWithoutBorders/pynwb 1 merged

Warn instead of raise error if SpatialSeries has more than 3 columns May 18

catalystneuro/pynwb 1 merged

Modify CI to test streaming with ros3 requirements May 3

Reviewed 4 pull requests in 3 repositories

NeurodataWithoutBorders/pynwb 2 pull requests

NeurodataWithoutBorders/nwbinspector 1 pull request

[Bug] encapsulate nwbfile after io.read() in same try/except May 4

hdmf-dev/hdmf 1 pull request

Allow adding of indexed columns via lists of lists May 2

Created an issue in hdmf-dev/hdmf that received 4 comments

[Feature]: Add official optional support for additional HDF5 filters

What would you like to see added to HDMF? As discussed over Zoom, now that MatNWB can use HDF5 filters from https://pypi.org/project/hdf5plugin/ be…

3 of 6 tasks

• 4 comments

Opened 6 other issues in 3 repositories

NeurodataWithoutBorders/pynwb 2 open 2 closed

NeurodataWithoutBorders/nwbinspector 1 open

[Add Check]: Images.order_of_images should map 1 to 1 to Image objects in Images May 19

dandi/dandi-schema 1 open

dandischema installed from conda-forge has version 0.0.0 when checked by pip May 3