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NeurodataWithoutBorders/pynwb

A Python API for working with Neurodata stored in the NWB Format

Python 69 41
NeurodataWithoutBorders/pynwb-course

Interactive Python course for using the Neurodata Without Borders format

CSS 1
PrincetonUniversity/pul-lip-v4-paper-code

MATLAB
simple-mua-detection

MATLAB script to detect spikes in high-pass filtered ephys data (Plexon PL2 format) using adaptive amplitude thresholding

MATLAB 2
PoGo-Raid-Organizer

JavaScript 1

1,116 contributions in the last year

Contribution activity

January 2020

Created a pull request in hdmf-dev/hdmf that received 8 comments

Enh/read scalar dset

@t-b says that the MIES software cannot write scalar datasets, which are represented by h5py as having shape (), so MIES instead writes 1-element d…

+3 −0 • 8 comments

Add minimum requirements CI testing for Windows and Mac Jan 18
Avoid creating modules.rst when running 'make apidoc' Jan 15
Update documentation Jan 14
Update manifest Jan 14
Add readthedocs configuration file Jan 14
Remove lingering references to NWB Jan 14
Fix and clean up documentation Jan 13
Streamline CI and add testing of min requirements Jan 11
Remove lingering mentions of PyNWB Jan 11
Do not run CI on latest and latest-tmp tags Jan 10
Update hdmf-common-schema to latest 1.1.2 Jan 10
Fix coverage path problem on Windows Jan 10
Update hdmf-common submodule to 1.1.1 Jan 9
Handle np.array(DataIO) for numpy in py38 Jan 9
Add Python 3.8 testing Jan 9
Move BuildManager, TypeMap to manager.py, have map.py keep old imports Jan 9
Add back git checkout to deploy-dev CI Jan 8
Attempt to fix deployment issue with submodule Jan 8
Attempt to fix deployment issue with submodule Jan 8
Refactor use of deepcopy by docval Jan 7
Add legal to source distribution, update copyright date Jan 4
Update schema submodule to latest 1.1.0 Jan 4

Reorder requirements-doc.txt to fix pynwb-hdmf dependency problem Jan 18
Update hdmf-common-schema submodule to 1.1.2 Jan 15
Update schema, docs to version 2.2.1 Jan 15
Reorder yaml keys Jan 15
Fix documentation; use hdmf-docutils Jan 9
Update release notes with missing notes, fix formatting Jan 7
Update hdmf-common submodule Jan 7
Update copyright year to 2020 Jan 4
Fix typos and remove reference to old conf_get_pynwb.py Jan 3
Fix misaligned table Jan 3
Clean up unused vars and fix makefile for windows Jan 3

Add and test minimum requirements for PyNWB Jan 18
Support NWB schema 2.2.1 Jan 17
Remove unittest2 dependency Jan 16
Update CI Jan 15
Add object ID tutorial Jan 15
Fixes to use latest sphinx Jan 15
Remove explicit six dependency Jan 15
Update hdmf and other reqs Jan 15
Use latest hdmf Jan 8
Add support for device description and manufacturer Jan 8
Update legal Jan 4

Fix entry points bug Jan 8
Update copyright info Jan 8
Fix README formatting - needed for pypi Jan 8
Remove pynwb requirement, more mentions of NWB Jan 7
Fix rendering error Jan 7
Comment out sg_prototype test Jan 4
Try changing subprocess call to stay in current env Jan 4
Try using newest sphinx version Jan 4

Add dims and shape to VectorData, VectorIndex, DynamicTableRegion Jan 18
Fix version number in namespace.yaml and docs Jan 10
Copy and adjust docs files from nwb-schema Jan 7
Bump version number to 1.1.0 Jan 3
Minor changes to clean up YAML files Jan 3

Pin hdmf req to 1.3.3 for pynwb 1.1.2 Jan 11

Pin run requirements Jan 11

set dims and shape of OpticalSeries.data for RGB images Jan 20
clarify electrode position coordinates Jan 4
add dtypes to schema language Jan 3
add CI test Jan 3
make dtype optional Jan 3
set Image dtype to numeric Jan 2
bump NWB schema version to 2.2.0 Jan 2
fix example schema Jan 2
fix RoiResponseSeries doc Jan 2

Refactor use of deepcopy by docval Jan 7
route export_spec Jan 6
try using numpy to determine shape Jan 3
improve docstring for DynamicTableRegion Jan 2

Update README.md Jan 16
Add NWB-DataJoint Integration Project. Jan 16

big port: nwb -> hdmf Jan 6

implement jinja2 templating Jan 6

add link back to ndx-template to README Jan 3

clarify ragged arrays Jan 2

Created an issue in quintusdias/glymur that received 3 comments

Glymur 0.9.0 install on windows fails, related to gdal

Installing glymur 0.9.0 requires the gdal package. On Windows 10, I get a fatal error when trying to install glymur related to gdal. As a result, I…

3 comments

Latest conda build breaks Jan 14
Software process docs need to be updated Jan 14
ReadTheDocs build broken Jan 14
CircleCI runs on latest and latest-tmp tags Jan 10
Coverage tests fail on Windows CI with coverage 5.0 Jan 9
HDMF release on PyPI includes old version of hdmf-common-schema Jan 7
docval uses a significant portion of runtime Jan 6

Set minimum dependency requirements in setup.py and release 1.2.0 Jan 17

News and publication pages missing IEEE Big Data paper Jan 14

Rename table types to end in Table Jan 3

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