seegSDM

Streamlined functions for species distribution modelling in the seeg research group.

This package contains (or at least will contain) a set of streamlined functions to fit species distribution models. The current focus is on the ensemble BRT approaches used in the recent Bhatt et al. dengue paper

Installing and loading the package

To install the package from gihub you first need to install and load Hadley Wickham's devtools package, like this:

install.packages('devtools')
library(devtools)

seegSDM currently depends on version 2.1-0.4 or later of the gbm R package. This version isn't on CRAN yet, so you'll need to install it from github first.

install_github('pdmetcalfe/gbm')

Now we can use install_github to install seegSDM

install_github('SEEG-Oxford/seegSDM')

and load the package and you're ready to go

library(seegSDM)

Reporting bugs

You can report bugs, issues and suggestions for extra functions using the issues button on the right hand side of this page.

Tutorial

There is the beginnings of a tutorial/example workflow for the package here