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hempelc/README.md

Welcome to my GitHub profile!

I’m Chris, a dedicated Bioinformatics Contractor and Consultant. I’m passionate about unlocking the secrets hidden in biological data. With my expertise in data analysis, genomics, and programming, I specialize in finding innovative solutions to complex bioinformatical problems. Below you'll find the projects I've been working on. Enjoy scrolling and feel free to reach out to me anytime!

Pinned

  1. MyScripts MyScripts Public

    Contains all scripts I'm commonly using. Some scripts are under development. Mainly used for backups.

    Shell

  2. metagenomics-vs-totalRNASeq metagenomics-vs-totalRNASeq Public

    Compares metagenomics and total RNA-Seq data-processing pieplines for microbial identification. Includes scripts to run pipelines on HPC clusters or locally, as well as scripts for statistical anal…

    Python 1 1

  3. apscale_wrapper apscale_wrapper Public

    A wrapper for the metabarcoding pipeline APSCALE to automatize the generation of apscale projects, quality control graphs, post-processing, and taxonomic annotation.

    Python

  4. mitogenome_assembly_evaluation mitogenome_assembly_evaluation Public

    Comparing and evaluating mitogenome assemblers

    Shell

  5. exstream-metagenomics-totalrnaseq-ml exstream-metagenomics-totalrnaseq-ml Public

    Scripts for data-processing and machine learning-based analysis of metagenomics and total RNA-Seq data from the ExStream project

    Python

  6. apscale apscale Public

    Forked from DominikBuchner/apscale

    Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

    Python