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Describe the error
In two Omicron-mutant entries in isolate_mutations.csv, there are two mutations that appear in the same position.
To locate the error
In https://github.com/hivdb/covid-drdb-payload/blob/master/tables/isolate_mutations.csv
BA.2 Spike:+N440Y has two mutations at position 440: Line 21808 - BA.2 Spike:+N440Y,S,440,Y,NULL,NULL Line 21816 - BA.2 Spike:+N440Y,S,440,K,NULL,NULL
BA.2 Spike:+N440D has two mutations at position 440: Line 21840 - BA.2 Spike:+N440D,S,440,D,NULL,NULL Line 21848 - BA.2 Spike:+N440D,S,440,K,NULL,NULL
See the screenshots below.
Expected behavior
I believe the 440K mutations should be removed from these entries, as this is the usual mutation in BA.2 at position 440.
Screenshots
BA.2 Spike:+N440Y:
BA.2 Spike:+N440D:
The text was updated successfully, but these errors were encountered:
fix #1048
8d063a6
761e823
Hi @by256 , this bug is fixed.
Sorry, something went wrong.
philiptzou
KaimingTao
No branches or pull requests
Describe the error
In two Omicron-mutant entries in isolate_mutations.csv, there are two mutations that appear in the same position.
To locate the error
In https://github.com/hivdb/covid-drdb-payload/blob/master/tables/isolate_mutations.csv
BA.2 Spike:+N440Y has two mutations at position 440:
Line 21808 - BA.2 Spike:+N440Y,S,440,Y,NULL,NULL
Line 21816 - BA.2 Spike:+N440Y,S,440,K,NULL,NULL
BA.2 Spike:+N440D has two mutations at position 440:
Line 21840 - BA.2 Spike:+N440D,S,440,D,NULL,NULL
Line 21848 - BA.2 Spike:+N440D,S,440,K,NULL,NULL
See the screenshots below.
Expected behavior
I believe the 440K mutations should be removed from these entries, as this is the usual mutation in BA.2 at position 440.
Screenshots
BA.2 Spike:+N440Y:
BA.2 Spike:+N440D:
The text was updated successfully, but these errors were encountered: