AmazonForest

AmazonForest: In-silico pathogenic metaprediction of pathogenic variants

The model is described in https://www.mdpi.com/2079-7737/11/4/538.

Use with python

$ python3 -m venv amazonforest-env

$ source amazonforest-env/bin/activate

$ pip install -r requirements.txt

Execute:

$ python run.py

Use with R Script

For to use R Script. you must access folder meta_prediction. In file amazonforest.R is an example the script for to use amazon forest model and RF13.Rdata is the model in format R.

Citation: Palheta, H.G.A.; Gonçalves, W.G.; Brito, L.M.; dos Santos, A.R.; dos Reis Matsumoto, M.; Ribeiro-dos-Santos, Â.; de Araújo, G.S. AmazonForest: In Silico Metaprediction of Pathogenic Variants. Biology 2022, 11, 538. https://doi.org/10.3390/biology11040538

Corresponding authors: Prof. Dr. Gilderlanio Santana de Araujo (gilderlanio [at] gmail.com) Ms.C Helber Palheta (hpalheta [at] gmail.com)