TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
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DESCRIPTION
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README.md
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README.md

TreeExp

TreeExp is an R package that performs analyses of expression evolution from RNA-seq data, including optimized input formatting, normalization and pair-wise distance evaluation, expression character tree inference and preliminary phylogenetic network analysis.

TreeExp package is under active developing, current developing version 2.0 is available at https://github.com/hr1912/TreeExp.

A convenient way to install package from github is through devtools package:

install.packages('devtools')
devtools::install_github("hr1912/TreeExp")

Users can also download TreeExp package and install locally through:

install.packages("filePath/TreeExp.2.0.tar.gz", repos = NUll, type = "source")

Please refer to vignettes for startup guide of TreeExp.