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Here are the issues in the CoLab and how to fix

Problem 1:

!sudo apt remove gcc gcc-7 g++ g++-7
!sudo apt install gcc-6 g++-6

This command is outdated as gcc6 is no longer supported on the current version

Solution of Problem 1:

  1. Go to sources.list, Add (deb http://dk.archive.ubuntu.com/ubuntu/ bionic main universe) at the end of the file, Hit command+s (Mac) to save the changes
  2. Add !sudo apt update as a code cell before you install gcc6

Problem 2:

# !sed -i "1254s/torch\.backends\.cudnn\.enabled/False/g" /usr/local/lib/python3.7/dist-packages/torch/nn/functional.py

Solution: Change 3.7 to 3.10

Note: !git clone https://github.com/cocodataset/cocoapi.git For the first time you run the colab, you should remove the # and actually clone the file into your Google Drive

Problem 3:

cd /content/drive/My Drive/COCOAPI/PythonAPI

Solution: Change to

cd /content/drive/My Drive/COCOAPI/cocoapi/PythonAPI

Problem 4:

Between

cd /content/drive/My Drive/COCOAPI/cocoapi/PythonAPI

and

!make

add

!pip install cython pycocotools

Problem 5:

Between

%cd /content/drive/My\ Drive/CircleNet/src

and

!python run_detection_for_scn.py circledet --arch dla_34 --demo "/content/drive/My Drive/CircleNet/example_case/Case 03-1.s

add

!pip install Pillow==6.2

Note: In your Google Drive,

  1. Download (clone) the CircleNet file under My Drive (similar to what we do to COCOAPI)
  2. Download two files under Whole Slide Image (case 03-1.scn & model_10.pth) and put them into according place following a. My Drive/CircleNet/example_case/Case 03-1.scn b. My\ Drive/CircleNet/trained_model/model_10.pth

If you have trouble finding ideep4py in command

!sudo ln -sf /usr/local/lib/python3.10/dist-packages/ideep4py/lib/libmkldnn.so.0.14.0 /usr/local/lib/python3.10/dist-packages/ideep4py/lib/libmkldnn.so.0

You can just comment it out and won’t affect the result