Splice-Alternative Profile Predictor (SpliceAPP)
===================
Web-service: https://bc.imb.sinica.edu.tw/WebApps/SpliceAPP/
Standalone : https://github.com/hsinnan75/SpliceAPP
For 3'ss (splice site) prediction, variants loacated between -78 and -4 of the 3' end of the intron can be processed.
For 5'ss prediction, the predictive models accept variants from -3 to +30 of the 5' end of the intron.
Only hg38 annotation is accepted for the prediction.
$ git clone https://github.com/hsinnan75/SpliceAPP.git
to download the package of SpliceAPP.
To run SpliceAPP, it requires docker and Rscript installed and download the prediction models (16GB) at https://bc.imb.sinica.edu.tw/SpliceAPP/data.tgz
Please decompress the file in the SpliceAPP. It will create a folder of data.
To compile SpliceAPP, please change to the folder of SpliceAPP/src and just type 'make' to compile SpliceAPP. If the compilation or the program fails, please contact me (arith@gate.sinica.edu.tw), Thanks.
Please type
$ src/SpliceAPP [vcf_file]
to run the program