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Missing tags can cause very long warnings in logs #4

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mkeays opened this issue Feb 13, 2020 · 0 comments
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Missing tags can cause very long warnings in logs #4

mkeays opened this issue Feb 13, 2020 · 0 comments
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@mkeays
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mkeays commented Feb 13, 2020

If a TIFF file is missing the "axes" tag, Cytokit issues a warning, in which it prints all the tags found and their contents. Sometimes files have tags such as "LUTs" or "Overlays" which contain large arrays and when these are printed they fill the logs with superfluous text.

One way to get around this is to pass export PYTHONWARNINGS="ignore" before running Cytokit, but this might mean we miss other important warnings.

Are there better ways to circumvent this? E.g. adding the "axes" tag, or removing the "LUTs"/"Overlays" tags?

@mkeays mkeays self-assigned this Feb 13, 2020
@mkeays mkeays added the enhancement New feature or request label Feb 13, 2020
@mkeays mkeays removed the enhancement New feature or request label Mar 31, 2020
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