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1. ben-laufer/CpG_Me ben-laufer/CpG_Me Public

   A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

   Shell 20 11

2. ben-laufer/DMRichR ben-laufer/DMRichR Public

   A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosin…

   R 38 22

3. CNV_Me CNV_Me Public

   Copy number variation (CNV) caller utilizing BAM files

   Python 2 1

4. SexChecker SexChecker Public

   Check sex of samples

   Python 1

5. bismark-file-converter bismark-file-converter Public

   This Bismark_to_Permeth_DSS.py script converts a Bismark format file to Permeth (percent methylation) and DSS format files.

   Python

6. machine-learning-asd-predictors machine-learning-asd-predictors Public

   Machine learning of DNA methylation predictors for Autism Spectrum Disorders (ASD)

   R 2 2