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  1. ome_convert_deid ome_convert_deid Public

    Convert from qptiff (and scn?) to ome tiff and remove some metadata.

    Python 1

  2. jason-weirather/good-neighbors jason-weirather/good-neighbors Public

    Identify neighborhoods based on local cell populations.

    Jupyter Notebook 4 2

  3. PixelDistance PixelDistance Public

    Forked from iddryg2/PixelDistance

    Using multi-channel microscopy images, calculates the minimum distance between two markers. In this case, it was used to calculate how invasive tumor cells were in lymph nodes by measuring the mini…

    Python 1 1

  4. SCSeqFxs SCSeqFxs Public

    Some functions for streamlined single cell sequencing analysis.

    R 1 1

  5. fgsea_plotupdown fgsea_plotupdown Public

    A modified version of plotEnrichment() from FGSEA. This version takes in two pathways instead of one: an UP and a DOWN -regulated pathway. Both are plotted on the same enrichment plot.

    R