about Figure 3

[xiaoshanpai]

Thanks for the great work.
Since it is not clearly stated in the article, I would like to ask whether Figure 3 (A-D) are plotted using the CCLE (precisely, "cell2mutation.txt" in the github). If so, which cells are represented by the gray dots in Figure 3 ?
In addition, I would like to ask whether the genotype embedding vector in this section refers to the "term_NN_out_map[root]" in the code,  or to the " term_NN_out [root]" without processing,  or to the " Tanh_out[root] " processed by the arctangent function.
Again, really thaks for your help.