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msigdb - collections expanded #22

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msigdb - collections expanded #22

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ozturan
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@ozturan ozturan commented Dec 7, 2022

Just an extension of the function with more information. Namely, the descriptions of the gene sets. I also added the major groups and number of genes.

add the major groups and their individual descriptions
add the major groups and the descriptions of all the gene sets
@igordot
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igordot commented Dec 7, 2022

Thank you for your contribution.

Is it possible to retrieve the descriptions programmatically? The collections/categories change across different versions of MSigDB. Hard-coded labels work for now, but they may break in a future release. There may be an error thrown if the total number changes, but the discrepancy would not be obvious if only the order changes.

@ozturan ozturan closed this Dec 8, 2022
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