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The repository contains Python implementation of core next-generation sequencing analysis algorithms.

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Algorithms for Sequencing Analysis

The repository contains Python implementation of core next-generation sequencing analysis algorithms.

Algorithm Script
Naive Algorithm naive_pattern_match.py
Aho-Corasick Algorithm ahocorasick.py
Backward Nondeterministic Dawg Matching Algorithm bndm.py
Maximal Unique Matches mum.py
Constructing a Suffix Array sais.py

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The repository contains Python implementation of core next-generation sequencing analysis algorithms.

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