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akt mendel error #39

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Eduardo-Auer opened this issue May 24, 2022 · 2 comments
Open

akt mendel error #39

Eduardo-Auer opened this issue May 24, 2022 · 2 comments

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@Eduardo-Auer
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Hello,
I am having an error with akt mendel when running the following command:

./akt mendel -p ~/akt/exomes_menonites/out.fam ~/akt/exomes_menonites/all_merged_exomes_mennonites_hg38_GRCh38.bcf > ~/akt/exomes_menonites/mendel.txt

ERROR: mendel command is deprecated. See the bcftools +mendelian plugin for equivalent functionality.
Exiting...

Is there any solution?
@jaredo
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jaredo commented Jul 5, 2022

We deprecated this function, you can checkout the mendel plugin for bcftools.

@Eduardo-Auer
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Thank you for the response. I am new to bcftools. Could you give a command example for a simple Mendel consistency check?

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@jaredo @Eduardo-Auer