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1. mdanalysis mdanalysis Public

   Forked from MDAnalysis/mdanalysis

   MDAnalysis is a Python library to analyze molecular dynamics trajectories.

   Python

2. ProteinPatchAnalysis ProteinPatchAnalysis Public

   Forked from garde-group/ProteinPatchAnalysis

   Codes to take a PDB and parcel it into a set of patches based on a voxel representation

   Jupyter Notebook

3. ProteinPatch_VAE ProteinPatch_VAE Public

   Protein patch variational autoencoder (VAE) to characterize protein surface topography & chemistry

   Jupyter Notebook

4. newton_raphson newton_raphson Public

   Script to implement Newton Raphson method

   Python