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GIMLI

Gimli is a library and tool for high-performance and multi-corpus recognition of biomedical entity names.

Go to http://bioinformatics.ua.pt/gimli for more information.

Documentation

Full Documentation: http://bioinformatics.ua.pt/gimli/doc

API Javadoc: http://bioinformatics.ua.pt/gimli/apidoc

Bug tracker

Have a bug? Please create an issue here on GitHub!

https://github.com/davidcampos/gimli/issues

Project Structure

This project is organized as follows:

config/							- model configuration files

resources/

	corpus/						- used corpora

	evaluation/					- evaluation scripts

	models/						- trained models

	tools/						- internal tools

gimli.sh						- executable

src/main/

	java/						- source code

	resources/

		lexicons/				- biomedical lexicons

		models/					- trained models for internal tools

Team

David Campos: david.campos(a)ua.pt

Sérgio Matos: aleixomatos(a)ua.pt

José Luís Oliveira: jlo(a)ua.pt

License

Copyright (C) 2011 David Campos, Universidade de Aveiro, Instituto de Engenharia Electrónica e Telemática de Aveiro

Gimli is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/.

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Annotation of biomedical entity names.

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