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inhyeoklee/README.md

Welcome to My GitHub! 👋

👨🏻‍💻 About Me

💬 I'm a 1st-year Human Genetics Ph.D. student at The University of Chicago.

🌱 I'm broadly interested in interrogating multi-omic human epigenome interactions with the power of Bayesian machine learning algorithms and stochastic modeling.

📫 You can always reach me at: ihlee@uchicago.edu

🔗 Connect with Me

Twitter: hyeokomics LinkedIn: inhyeoklee

🛠️ Languages and Tools

Python R Bash C++ Docker Git Linux Pandas Scikit Learn Seaborn

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  1. Using-CellChat-for-Ligand-Receptor-Interaction-Analysis Using-CellChat-for-Ligand-Receptor-Interaction-Analysis Public

    This project uses CellChat R package to decipher ligand-receptor network among the cell types of interest.

    R 1

  2. 10X-Visium-Analysis-for-Spatial-Mapping-of-Gene-Expressions 10X-Visium-Analysis-for-Spatial-Mapping-of-Gene-Expressions Public

    This Jupyter notebook provides a pipeline for spatial analysis using the Scanpy library. The analysis includes data preprocessing, integration, and visualization.

    Jupyter Notebook 1

  3. contextual_retriever contextual_retriever Public

    ContextualRetriever enhances document retrieval accuracy by leveraging Voyage AI models for embedding & reranking models, and the GEMINI model for context and retrieval generation.

    Python 1