Workflow propagation

[walkowif]

Propagation of:
https://github.com/insightsengineering/idr-tasks/issues/649
https://github.com/insightsengineering/idr-tasks/issues/700
https://github.com/insightsengineering/idr-tasks/issues/714

[github-actions]

Code Coverage Summary

Filename                   Stmts    Miss  Cover    Missing
-----------------------  -------  ------  -------  ------------------------
R/assertthat.R                19       1  94.74%   149
R/calc_cor.R                  25       0  100.00%
R/checkmate.R                  4       0  100.00%
R/connections.R              143     125  12.59%   27-161, 215-287, 356-381
R/differential.R             101       3  97.03%   190, 193, 196
R/dplyr_compatibility.R        3       1  66.67%   23
R/draw_barplot.R              34       0  100.00%
R/draw_boxplot.R              71       5  92.96%   81, 88-89, 106, 109
R/draw_heatmap.R              35       1  97.14%   71
R/draw_scatterplot.R          32       4  87.50%   73-74, 87, 93
R/GeneSpec-class.R            68       0  100.00%
R/graphs.R                   107       3  97.20%   107-109
R/HermesData-class.R          35       4  88.57%   134-137
R/HermesData-methods.R       194       0  100.00%
R/HermesData-validate.R       44       0  100.00%
R/join_cdisc.R                37       0  100.00%
R/normalization.R            100       2  98.00%   194, 223
R/pca_cor_samplevar.R         59       0  100.00%
R/pca.R                       28       0  100.00%
R/quality.R                   75       3  96.00%   109-112
R/top_genes.R                 51       0  100.00%
R/utils.R                     98       0  100.00%
TOTAL                       1363     152  88.85%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: e069cb5

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

    1 files    23 suites   1m 4s ⏱️
273 tests 256 ✔️ 17 💤 0 ❌
849 runs  827 ✔️ 22 💤 0 ❌

Results for commit e069cb5.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
HermesData-methods	💚	$9.85$	$-4.21$	$0$	$0$	$0$	$0$
calc_cor	💚	$5.02$	$-2.25$	$0$	$0$	$0$	$0$
differential	💚	$52.08$	$-23.24$	$0$	$0$	$0$	$0$
graphs	💚	$4.50$	$-2.21$	$0$	$0$	$0$	$0$
normalization	💚	$18.30$	$-6.64$	$0$	$0$	$0$	$0$
pca	💚	$7.30$	$-3.14$	$0$	$0$	$0$	$0$
top_genes	💚	$5.82$	$-2.46$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
HermesData-methods	💚	$5.63$	$-2.94$	lapply_works_as_expected_for_an_MAE
calc_cor	💚	$3.55$	$-1.61$	autoplot_for_HermesDataCor_works_as_expected_with_custom_options
differential	💚	$9.35$	$-4.29$	diff_expression_allows_passing_of_method_arguments_to_helper_functions
differential	💚	$10.18$	$-5.57$	diff_expression_works_as_expected_with_the_DESeq2_method
differential	💚	$16.74$	$-7.24$	h_diff_expr_deseq2_can_pass_arguments_to_DESeq2_DESeq
differential	💚	$9.18$	$-4.54$	h_diff_expr_deseq2_works_as_expected
normalization	💚	$6.32$	$-2.13$	h_rlog_function_works_as_expected_with_custom_settings
normalization	💚	$5.30$	$-1.35$	h_rlog_function_works_as_expected_with_default_settings

Results for commit 97d6537

♻️ This comment has been updated with latest results.

[danielinteractive]

Note that BiocCheck result can be ignored.