CMAPLE is a C++ reimplementation of MAPLE - a novel likelihood-based phylogenetic inference method for pandemic-scale epidemiological genomic data. CMAPLE is highly optimized for performance and scalability with many new features.
Apart from a standalone software, we also provide a set of APIs, which allow users to integrate CMAPLE into existing phylogenetic inference methods. For more detail, please see API_Documentation.
To be updated...
Please refer to our Wiki page for installation instructions and usage examples of CMAPLE.
See CONTRIBUTING file.
CMaple is governed by some rules, which serve to protect our community and its individuals. See CODE_OF_CONDUCT for details.
CMAPLE relies on the following third-party libraries:
- ncl (version 2.0) - Licensed under the GNU General Public License.
- simde - Licensed under the MIT License.
- zlib (version 1.2.7).