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49 Open 140 Closed
49 Open 140 Closed
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Issues list

Undefined subroutine &RUM::Script::Indexes::isdigit
#190 opened Dec 30, 2021 by rashidma
2
RUM and Bowtie2
#188 opened Nov 30, 2018 by katharinedickson
2
rum_runner says it uses a default --prefix, but it doesn't
#187 opened Aug 12, 2015 by amirkarger
make test fails on several files due to "unsorted output"
#186 opened Aug 11, 2015 by amirkarger
Test failed: merge-gnu-and-tnu-and-cnu.t & rum-to-sam.t
#185 opened Mar 8, 2015 by hwlim
1
Test failed: merge-gnu-and-tnu-and-cnu.t & rum-to-sam.t
#184 opened Mar 8, 2015 by hwlim
Unbundle mdust, blat and bowtie from the package
#183 opened Jun 23, 2014 by mmokrejs
rum-2.0.5_05: Warning: the following files are missing in your kit: lib/RUM/Script/QuantifyExons.pm
#182 opened Jun 23, 2014 by mmokrejs
1
Corrupt line from RUM_NU
#181 opened Apr 24, 2014 by audreymannion
Proper sam formating bug sam
#180 opened Feb 12, 2014 by choishingwan
2
LSF cluster
#178 opened Oct 11, 2013 by khayer
2
Novel and known introns with same coordinates
#177 opened Aug 12, 2013 by ryanames
Can't Generate plan for postprocessing.
#175 opened Jun 1, 2013 by gotte
6
junction score with paired-end data - is it # of reads or fragments?
#170 opened Apr 16, 2013 by nmanik
4
Bug in calculation of IH:i in the SAM file?
#168 opened Mar 21, 2013 by mdelaurentis
Incorrect counts in mapping_stats file
#166 opened Feb 18, 2013 by mdelaurentis
trascriptomes
#164 opened Feb 14, 2013 by safisher
SAM headers should be changed to contain all chromosomes
#163 opened Feb 13, 2013 by mdelaurentis
RUM doesn't know it stopped
#162 opened Jan 22, 2013 by asowalsky
11
another broken RUM job
#161 opened Jan 4, 2013 by safisher
2
error during aligning
#160 opened Jan 4, 2013 by safisher
Can't create new indices
#159 opened Dec 25, 2012 by tianyang-li
7
multi-mapper in RUM_Unique... revisited
#158 opened Dec 19, 2012 by safisher
2
Bowtie flags
#157 opened Dec 13, 2012 by safisher
1
about custom index
#156 opened Dec 13, 2012 by jlduan
1
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