Code associated with Jimenez et al., 2020
Mablab functions for processing calcium traces are located in raw_data_processing Jupyter notebook and functions for computing graph metrics located in graph_analysis This repository is unfinished, code is subject to change.
Please contact Rene Hen (rh95@columbia.edu) for inquiries about accessing calcium imaging data, or Jess Jimenez (jcj2123@cumc.columbia.edu) for questions about the analysis.
Citation: Jimenez, J.C., Berry, J.E., Lim, S.C. et al. Contextual fear memory retrieval by correlated ensembles of ventral CA1 neurons. Nat Commun 11, 3492 (2020). https://doi.org/10.1038/s41467-020-17270-w