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denovolyzeR.org

This repository contains the source code for the denovolyzeR website, built using jekyll. denovolyzeR is an R package for the analysis of de novo (sporadic) genetic variants.

to update the website

For full info on site structure see jekyll. In brief:

  • the homepage content is edited in index.md
  • the news page is edited by depositing markdown articles into _news
  • the sidebar menu structure is embedded in _includes/sidebar.html
    (currently home / about / news / accessibility are pages within the site. Other headings are direct external links)
  • to add a new direct link to the sidebar, you would need to edit sidebar.html
  • to add a new page to the site, you simply drop a new .md (or html?) file into the root folder with the appropriate front matter - see about.md for an example. If the header includes layout: page, the page will be compiled and indexed in the sidebar

to compile the website

jekyll must be installed (instructions for jekyll)
jekyll build will compile the site ino the _site folder
the _site folder is copied to the live server denovolyzeR.org:~/live/docs

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