SBT (Seeing Beyond the Target) tool

Installing SBT

Step 1 - Install Conda
Step 2 - Download the SBT tool
- git clone https://github.com/jaquejbrito/sbt
- cd sbt
- ./install.sh
Step 3 - Download the SBT database
- wget https://ndownloader.figshare.com/files/27416207
- unzip dbs.zip
Step 4 - Configure the SBT tool editing the file settings.sh to:
- define the path to the tools called within SBT
- set the genome reference build version (hg19/hg38)
- set the steps to be run by SBT

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
LICENSE		LICENSE
README.md		README.md
argparse.bash		argparse.bash
count.microbiome.reads.py		count.microbiome.reads.py
install.sh		install.sh
merge_summaries.py		merge_summaries.py
number.reads.bam.py		number.reads.bam.py
sbt.sh		sbt.sh
sbt_imrep.sh		sbt_imrep.sh
sbt_mtDNA.sh		sbt_mtDNA.sh
sbt_needle.sh		sbt_needle.sh
sbt_offtarget_cov.sh		sbt_offtarget_cov.sh
sbt_rDNA.sh		sbt_rDNA.sh
settings.sh		settings.sh