metabolyseR 0.14.0
-
Added a
NEWS.md
file to track changes to the package. -
pkgdown
site now available at https://jasenfinch.github.io/metabolyseR/. -
Bug reports and issues URL at https://github.com/jasenfinch/metabolyseR/issues added to package DESCRIPTION.
-
Dedicated vignettes now available for a quick start example analysis, data pre-treatment and data modelling.
-
Function examples added to all documentation pages.
-
Unit test coverage increased to > 95%.
-
Parallel processing is now implemented using the
future
package. -
plan()
from thefuture
package is re-exported. -
RandomForest
andUnivariate
classes now inherit from class theAnalysisData
class. -
Improvements to plot theme aesthetics.
-
type
argument added toplotPCA()
,plotLDA()
,plotUnsupervisedRF()
andplotSupervisedRF()
methods for theAnalysis
class. -
"pre-treated"
for specifying type argument inAnalysis
class methods now used over"preTreated"
-
Added
clsRename()
method for renaming class information columns. -
plotMeasures()
method renamed toplotMetrics()
. -
Added
plotMDS()
,plotImportance()
andplotMetrics()
methods for lists ofRandomForest
class objects. -
Added
plotExplanatoryHeatmap()
method for lists ofRandomForest
orUnivariate
class objects. -
Renamed
keepVariables()
andremoveVariables()
methods tokeepFeatures()
andremoveFeatures()
. -
Added the helper functions
preTreatmentElements()
,preTreatmentMethods()
andpreTreatParameters()
for declaring pre-treatment parameters for theAnalysisParameters
class. -
Added the helper functions
modellingMethods()
andmodellingParameters()
for declaring modelling parameters for theAnalysisParameters
class. -
Added helper function
correlationsParameters()
for declaring correlations parameters for theAnalysisParameters
class. -
Added
binaryComparisons()
method for retrieving all possible binary class comparisons from anAnalysisData
class object. -
changeParameter()
now assigns parameter values through direct assignment. -
Added
analysisResults()
method from extracting analysis elements results from theAnalysis
class. -
Added
exportParameters()
method for exporting analysis parameters to YAML file format. -
Added
dat()
andsinfo()
accessor methods for theAnalysis
class. -
Relative standard deviation (RSD) values are now specified and returned as percentages.