- Since the program was written by matlab language, the MATLAT software must be installed firstly.
- dRHP-GreyFun uses the following dependent software: BLAST and HMMER. You can install the two software and database from
- BLAST, ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
- swissport ftp://ftp.ncbi.nlm.nih.gov/blast/db/swissprot.tar.gz
- HMMER
[family, prob] = predictProteinRemoteHomology('query.fasta');
-query.fasta:
a string of fasta file including query proteins
-family:
predicting remote homology family name
-prob:
predicting probability