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Software Enviroment Requirement

  • Since the program was written by matlab language, the MATLAT software must be installed firstly.
  • dRHP-GreyFun uses the following dependent software: BLAST and HMMER. You can install the two software and database from
    • BLAST, ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
    • swissport ftp://ftp.ncbi.nlm.nih.gov/blast/db/swissprot.tar.gz
    • HMMER

Useage

[family, prob] = predictProteinRemoteHomology('query.fasta');

	-query.fasta:
		a string of fasta file including query proteins
	-family:
		predicting remote homology family name
	-prob:
		predicting probability

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