Part 3 - Isolation by Resistance using MLPE Models

This suit of scripts were developed based on LanGen_pipeline

For a similar pipeline without using VCFtools v.0.1.16, check our Populational Genomics Pipeline

 

Scripts:

3.1_DISTANCE_MATRICES.R: Creating distances matrices to represent resistance values based on:

1. Euclidian Distance (Geographic Distance)
2. Topographic Distance in TopoDistance R package
3. RiverNetwork Distance in riverdist R package
4. Productivity Distance based on Species Distribution Models (SDM). To see the scripts on SDM
5. Habitat Distance based on a categorial raster LandUse/Biomes/etc

3.2_SELECTING_MATRICES.R: Organizing and choose Distances Matrices

3.3_RUNNING_MLPE_LME.R: Running Mixed models to estimate Isolation-by-Resistance (IBR) between individuals using lme()

3.4_RUNNING_NMLPE_GLS.R: Running Mixed models to estimate Isolation-by-Resistance (IBR) between individuals using gls() and Nested MLPE

 

INITIAL PAGE

PART 1 - GENETIC STRUCTURE AND GENETIC DIVERSITY

PART 2 - ISOLATION BY DISTANCE AND FINE-SCALE SPATIAL GENETIC STRUCTURE

PART 4 - LOCAL ADAPTATION ANALYSES - IDENTIFICATION OF CANDIDATES LOCI UNDER SELECTION