jeetsukumaran / DendroPy

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Please tag a new release that contains 972d12fe2be3241c33fb2a969e5f0271158a24fc

#125 opened Jul 14, 2020 by jonchang

Test suite vanished from download tarball

#122 opened Oct 8, 2019 by tillea

dendropy.utility.error.UltrametricityError

#121 opened Sep 19, 2019 by nick-youngblut

accuracy of gene tree simlation

#120 opened Sep 6, 2019 by zzbbf123

Calling the Paup tree estimate method returns an error

#119 opened Aug 7, 2019 by mlalith2006

Preserve_underscores

#112 opened Apr 23, 2019 by wrightaprilm

Seg Fault when deepcopy-ing large tree

#110 opened Mar 27, 2019 by MGNute

NewickReaderMalformedStatementError: NewickReaderMalformedStatementError

#107 opened Feb 21, 2019 by snowflake01986

MRCA algorithm can be faster

#99 opened Sep 11, 2018 by niemasd

extract_tree_with_taxa + str() produces malformed tree

#95 opened May 10, 2018 by niemasd

`split_distribution` crashes with `TypeError`

#89 opened Jan 11, 2018 by mjr129

random seed reproducibility of treesim.birth_death_tree when using numpy.save

#88 opened Dec 14, 2017 by idavydov

functions extract_tree_with_taxa and extract_tree_with_taxa_labels have extra parameters in the documentation

#86 opened Nov 14, 2017 by idavydov

Is there a summarization demo of the DendroPy/

#83 opened Jul 26, 2017 by JafferWilson

Dedropy mistakenly looking for DNA alphabet in ProteinCharacterMatrix.get

#81 opened May 4, 2017 by tauanajc

Dendropy incorrectly reads terminating unnamed unifurcations

#76 opened Feb 5, 2017 by hyanwong

test failure on ubuntu with python 2.7.11+

#74 opened Jan 17, 2017 by mtholder

Floating point error accumulation in contained coalescent trees

#63 opened Jul 13, 2016 by yasuiniko

Documentation for newick output possibly wrong

#57 opened Jun 15, 2016 by hyanwong

possible enhancement: retain edge identity when rerooting

#54 opened May 17, 2016 by mtholder

Maximum recursion depth error

#52 opened May 13, 2016 by ericmjl

Feature request: Writing to JSON schema

#46 opened Mar 31, 2016 by Zsailer

Parsing NEXUS trees with undefined taxon labels does not raise error

#37 opened Oct 5, 2015 by jeetsukumaran

Common Ancestors age strategy for --set-edges

#32 opened Sep 11, 2015 by nitishnarula

Ordered Parsimony

#25 opened Aug 12, 2015 by mccannj9

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