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39 Open 74 Closed
39 Open 74 Closed
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Issues list

Correctly load newick node annotations containing nested lists
#145 opened Dec 8, 2022 by willdumm
Special characters in input tree tip labels causes unpredictable renaming
#144 opened Sep 17, 2022 by AlesBucek
Should Node.extract_subtree return Tree, not seed node, & copy annotations?
#143 opened Sep 1, 2022 by MordorianGuy
multiprocess :: mp.cpu_count() instead of len(os.sched_getaffinity(0))
#142 opened Aug 31, 2022 by EricDeveaud
Calling tab complete on a tree surpresses unifurcations in Python 3.7.3
#141 opened Mar 15, 2022 by emilydolson
Creating new tree from seed node removes node from original tree
#138 opened Oct 31, 2021 by Adam-Gleave
please create a release
#137 opened Oct 25, 2021 by joelb123
Re-enable secure SSL in setup.py
#133 opened Apr 3, 2021 by kislyuk
2
Can't set random seed or substitution model in RAxML wrapper
#131 opened Mar 7, 2021 by NoahAmsel
1
PhylogeneticDistanceMatrix.distances: return symmetric distances
#127 opened Dec 16, 2020 by nick-youngblut
4
resolve_polytomies could return number of polytomies resolved
#126 opened Oct 7, 2020 by hyanwong
Test suite vanished from download tarball
#122 opened Oct 8, 2019 by tillea
4
dendropy.utility.error.UltrametricityError
#121 opened Sep 19, 2019 by nick-youngblut
2
accuracy of gene tree simlation
#120 opened Sep 6, 2019 by zzbbf123
Calling the Paup tree estimate method returns an error
#119 opened Aug 7, 2019 by mlalith2006
Preserve_underscores
#112 opened Apr 23, 2019 by wrightaprilm
2
Seg Fault when deepcopy-ing large tree
#110 opened Mar 27, 2019 by MGNute
3
NewickReaderMalformedStatementError: NewickReaderMalformedStatementError
#107 opened Feb 21, 2019 by snowflake01986
MRCA algorithm can be faster
#99 opened Sep 11, 2018 by niemasd
1
extract_tree_with_taxa + str() produces malformed tree
#95 opened May 10, 2018 by niemasd
2
split_distribution crashes with TypeError
#89 opened Jan 11, 2018 by mjr129
1
random seed reproducibility of treesim.birth_death_tree when using numpy.save
#88 opened Dec 14, 2017 by idavydov
functions extract_tree_with_taxa and extract_tree_with_taxa_labels have extra parameters in the documentation
#86 opened Nov 14, 2017 by idavydov
Is there a summarization demo of the DendroPy/
#83 opened Jul 26, 2017 by JafferWilson
Dedropy mistakenly looking for DNA alphabet in ProteinCharacterMatrix.get
#81 opened May 4, 2017 by tauanajc
1
ProTip! What’s not been updated in a month: updated:<2023-01-01.