Cu 86bz306ft benchmark linker and api #305
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Task linked: CU-86bz306ft Benchmark Linker and API |
WalkthroughThe recent changes enhance the Akka application's performance and scalability through significant configuration adjustments, including timeout settings and connection management. New scripts for benchmarking and data generation improve usability, while modifications to existing code streamline error handling and logging. Together, these updates foster a more robust, maintainable, and efficient environment for application deployment and testing. Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant Application
participant Database
participant Kafka
User->>Application: Sends Request
Application->>Kafka: Send Data
Kafka-->>Application: Acknowledge
Application->>Database: Execute Transaction
Database-->>Application: Return Result
Application-->>User: Response
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Actionable comments posted: 8
Outside diff range, codebase verification and nitpick comments (7)
devops/benchmarking/api-read.js (1)
52-53: Logging of response body.The script logs the response body to the console. This can be useful for debugging but may clutter the output during large-scale tests. Consider conditional logging or summarizing the output.
devops/benchmarking/kafka-monitor.js (3)
1-6: Add a detailed header comment.The current header comment is minimal. Consider adding more details about the purpose of the script, its usage, and any dependencies.
-/* -This is a k6 test script that imports the xk6-kafka and -tests Kafka with a 200 JSON messages per iteration. -*/ +/** + * This script is a k6 performance test for Kafka using the xk6-kafka extension. + * It benchmarks Kafka by consuming JSON messages. + * + * Usage: k6 run <script_name.js> + * Dependencies: xk6-kafka extension + */
8-15: Remove unused import statements.The commented-out import for
kafkashould be removed if it is not needed.-// import * as kafka from "k6/x/kafka";
32-34: Clarify the purpose of the topic creation condition.The condition
if (__VU == 0)is used to create a topic, but the reasoning isn't clear. Consider adding a comment to explain this logic.+// Create the topic only once, by the first virtual userJeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/kafka/MyKafkaConsumerByTopic.java (1)
51-53: Implement logic for partition assignment.The
onPartitionsAssignedmethod currently contains no logic. Consider implementing necessary actions, such as seeking to specific offsets or initializing resources.@Override public void onPartitionsAssigned(final Collection<TopicPartition> partitions) { // Example: Seek to the last committed offset for (TopicPartition partition : partitions) { long offset = getLastCommittedOffset(partition); consumer.seek(partition, offset); } }devops/benchmarking/api-write.js (1)
123-135: Review HTTP request execution and error handling.The script sends HTTP POST requests and checks for a 200 status. Consider expanding error handling to cover other potential status codes and response validation.
const success = check(res, { 'status is 200': (r) => r.status === 200, 'status is 201': (r) => r.status === 201, 'status is 409': (r) => r.status === 409, // Add more checks as needed });JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/GlobalConstants.java (1)
67-67: Potential Impact on System Resilience Due to Reduced Dgraph Reconnect RetriesThe reduction of
TIMEOUT_DGRAPH_RECONNECT_RETRIESfrom 20 to 5 inDgraphClient.javamay significantly impact the system's ability to handle transient connectivity issues with Dgraph. This change affects the retry mechanism in thedoMutateTransactionmethod, potentially leading to more frequent operation failures in case of temporary network or server issues.
- File:
JeMPI_Apps/JeMPI_LibMPI/src/main/java/org/jembi/jempi/libmpi/dgraph/DgraphClient.java- Method:
doMutateTransactionConsider evaluating the potential impact on system stability and adjust the retry count if necessary to maintain desired resilience levels.
Analysis chain
Verify the impact of reducing Dgraph reconnect retries.
The
TIMEOUT_DGRAPH_RECONNECT_RETRIESconstant has been reduced from 20 to 5. This change may affect the system's resilience to transient connectivity issues with Dgraph.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the usage of TIMEOUT_DGRAPH_RECONNECT_RETRIES to assess the impact of reducing retries. # Test: Search for the constant usage. Expect: Review how the reduced retries affect the system. rg --type java 'TIMEOUT_DGRAPH_RECONNECT_RETRIES'Length of output: 783
Script:
#!/bin/bash # Extract the relevant code sections from DgraphClient.java to understand the usage of TIMEOUT_DGRAPH_RECONNECT_RETRIES. rg --type java -A 10 'TIMEOUT_DGRAPH_RECONNECT_RETRIES' JeMPI_Apps/JeMPI_LibMPI/src/main/java/org/jembi/jempi/libmpi/dgraph/DgraphClient.javaLength of output: 744
Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (26)
- .gitignore (1 hunks)
- JeMPI_Apps/JeMPI_API/src/main/resources/application.conf (2 hunks)
- JeMPI_Apps/JeMPI_API_KC/src/main/resources/application.conf (2 hunks)
- JeMPI_Apps/JeMPI_AsyncReceiver/src/main/java/org/jembi/jempi/async_receiver/Main.java (1 hunks)
- JeMPI_Apps/JeMPI_AsyncReceiver/src/main/resources/application.conf (1 hunks)
- JeMPI_Apps/JeMPI_BackupRestoreAPI/src/main/resources/application.conf (1 hunks)
- JeMPI_Apps/JeMPI_Controller/src/main/resources/application.conf (1 hunks)
- JeMPI_Apps/JeMPI_ETL/src/main/resources/application.conf (1 hunks)
- JeMPI_Apps/JeMPI_LibAPI/src/main/java/org/jembi/jempi/libapi/ProxyRoutes.java (1 hunks)
- JeMPI_Apps/JeMPI_LibMPI/src/main/java/org/jembi/jempi/libmpi/dgraph/DgraphClient.java (3 hunks)
- JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/kafka/MyKafkaConsumerByTopic.java (2 hunks)
- JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/GlobalConstants.java (1 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Ask.java (1 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Main.java (2 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPInteractions.java (3 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPMU.java (1 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/backend/BackEnd.java (1 hunks)
- JeMPI_Apps/JeMPI_Linker/src/main/resources/application.conf (2 hunks)
- JeMPI_Apps/build-app-image.sh (1 hunks)
- devops/JeMPI_TestData/Reference/DataGenerator.py (4 hunks)
- devops/benchmarking/README.md (1 hunks)
- devops/benchmarking/api-read.js (1 hunks)
- devops/benchmarking/api-write.js (1 hunks)
- devops/benchmarking/kafka-monitor.js (1 hunks)
- devops/benchmarking/linker-test.js (1 hunks)
- devops/linux/docker/d-stack-1-build-___-reboot.sh (1 hunks)
Files skipped from review due to trivial changes (3)
- .gitignore
- JeMPI_Apps/JeMPI_AsyncReceiver/src/main/java/org/jembi/jempi/async_receiver/Main.java
- devops/benchmarking/README.md
Additional context used
Shellcheck
devops/linux/docker/d-stack-1-build-___-reboot.sh
[warning] 24-24: Declare and assign separately to avoid masking return values.
(SC2155)
[warning] 25-25: Declare and assign separately to avoid masking return values.
(SC2155)
[warning] 34-34: Declare and assign separately to avoid masking return values.
(SC2155)
[error] 81-81: Arrays implicitly concatenate in [[ ]]. Use a loop (or explicit * instead of @).
(SC2199)
[warning] 81-81: Remove quotes from right-hand side of =~ to match as a regex rather than literally.
(SC2076)
[warning] 84-84: Quote to prevent word splitting/globbing, or split robustly with mapfile or read -a.
(SC2206)
[error] 92-92: Argument mixes string and array. Use * or separate argument.
(SC2145)
Ruff
devops/JeMPI_TestData/Reference/DataGenerator.py
8-8:
src.helperimported but unusedRemove unused import:
src.helper(F401)
Additional comments not posted (42)
JeMPI_Apps/JeMPI_ETL/src/main/resources/application.conf (1)
3-5: Consider the impact of increased timeout settings.The
idle-timeout,request-timeout, andlinger-timeouthave been increased to 60 seconds. While this change can improve handling of long-running requests or slow clients, it may also result in higher resource consumption if connections are kept open longer. Ensure that this change aligns with the expected traffic patterns and resource availability.JeMPI_Apps/JeMPI_AsyncReceiver/src/main/resources/application.conf (1)
3-5: Evaluate the necessity of extended timeout settings.The increase to 60 seconds for
idle-timeout,request-timeout, andlinger-timeoutshould be evaluated against the application's performance requirements and server capacity. Prolonged timeouts can lead to resource exhaustion if not managed properly.JeMPI_Apps/JeMPI_Controller/src/main/resources/application.conf (1)
3-5: Assess the uniform timeout increase across components.The consistent increase to 60 seconds for all timeout settings across different components should be justified by specific application needs. While this can enhance user experience under certain conditions, it may also lead to potential resource management challenges.
JeMPI_Apps/build-app-image.sh (1)
13-13: Implications of using--no-cachein Docker build.The addition of the
--no-cacheoption in the Docker build command ensures that no cached layers are used, which can be useful for retrieving the most up-to-date dependencies. However, this may lead to longer build times. Consider whether this trade-off is acceptable for your use case.JeMPI_Apps/JeMPI_Linker/src/main/resources/application.conf (4)
7-9: Increased connection pool limits.The
max-connectionsandmax-open-requestssettings have been increased to 1024. This allows for handling more simultaneous connections and requests, which can improve performance under high load conditions.
12-14: Extended server timeouts.The
idle-timeout,request-timeout, andlinger-timeouthave been extended to 400 seconds. This change reduces the likelihood of premature timeouts, enhancing system resilience, especially in environments with variable response times.
20-21: Enhanced dispatcher parallelism.The
parallelism-minandparallelism-maxsettings have been set to 8 and 64, respectively. These changes aim to improve concurrency capabilities, allowing better utilization of available resources in the actor system.
35-35: Increased fixed pool size for blocking dispatcher.The
fixed-pool-sizehas been doubled to 1024, allowing more simultaneous threads in blocking operations. This can enhance performance under load but may also increase resource usage.devops/benchmarking/api-read.js (4)
6-6: Configuration of requests per user per second.The
requestsPerUserSecondvariable is set to 1, configuring the rate of requests each virtual user will send. This is a crucial parameter for controlling the load generated by the test.
10-10: Definition of custom error rate metric.The
errorRatemetric is defined to track the proportion of failed requests. This is useful for monitoring the reliability of the API under test.
13-25: Load test scenario configuration.The
optionsobject defines the stages of the load test, ramping up to 100 users, maintaining that load, and then ramping down. Thresholds for error rates and request durations are set to ensure acceptable performance levels.
40-42: Use of HTTP GET instead of POST.The script uses an HTTP GET request to the specified URL. If the endpoint is intended to receive data, a POST request might be more appropriate. Verify the API specifications to ensure the correct method is used.
devops/benchmarking/kafka-monitor.js (2)
77-84: Ensure proper resource cleanup.The teardown function cleans up resources. Ensure that all resources are properly closed to prevent leaks.
Verification successful
All Kafka resources are properly closed in the
teardownfunction.The
teardownfunction correctly closes all relevant Kafka resources (readerandconnection). No additional resources were found that require closure.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify that all Kafka resources are properly closed. # Test: Check for any open Kafka connections or readers after teardown. rg --type javascript -A 5 $'reader.close()' | grep -q 'connection.close()'Length of output: 110
Script:
#!/bin/bash # Description: Check for any other Kafka-related resources that might need closing in the codebase. # Search for Kafka-related resource initializations. rg --type js 'new Kafka' -A 5 # Search for any other close methods that might be related to Kafka resources. rg --type js '\.close\('Length of output: 172
43-74: Ensure message validation checks are comprehensive.The checks validate various message attributes. Ensure that these checks align with the expected message schema and add more checks if necessary.
JeMPI_Apps/JeMPI_BackupRestoreAPI/src/main/resources/application.conf (1)
6-8: Evaluate the impact of increased timeouts.Increasing the timeouts to 60 seconds may improve user experience for long-running requests but could also tie up server resources. Ensure this change aligns with the overall performance strategy.
JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Main.java (2)
49-63: Approved: Enhanced logging for actor lifecycle events.Logging actor termination and restart events provides valuable insights into the actor's lifecycle and aids in debugging.
Verify that the log levels used are consistent with the application's logging strategy.
Verification successful
Verified: Consistent use of logging levels across the codebase
The use of
infolevel logging for actor lifecycle events inMain.javais consistent with the application's logging strategy. The logging levels across the codebase are appropriately used for their respective contexts.
- The
infolevel is used for significant lifecycle events.- Other levels like
debug,error, andwarnare used appropriately in different contexts.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify logging levels used in the codebase. # Test: Search for logger usage. Expect: Consistent use of logging levels across the codebase. rg --type java 'LOGGER\.(info|debug|error|warn)'Length of output: 72675
34-39: Approved: Supervision strategy with logging.The supervision strategy using
Behaviors.supervise()withSupervisorStrategy.resume()and logging enabled is a robust choice for handling transient failures in theBackEndactor.Ensure that this strategy aligns with the application's overall resilience and fault tolerance requirements.
Verification successful
Verified: Consistent and appropriate supervision strategies.
The supervision strategies in
Main.javaare consistent and well-suited to their respective contexts:
- Resume with Logging: Used for transient failures in the
BackEndactor.- Termination Handling: Logs termination reason and stops the behavior, ensuring proper shutdown.
These strategies align well with the application's resilience and fault tolerance requirements.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify all supervision strategies used in the codebase. # Test: Search for supervision strategies. Expect: Consistent use of strategies across actors. rg --type java 'Behaviors.supervise'Length of output: 265
Script:
#!/bin/bash # Description: Extract details of supervision strategies in Main.java. # Extract lines around supervision strategies for context. rg --type java -A 5 'Behaviors.supervise' JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Main.javaLength of output: 634
JeMPI_Apps/JeMPI_API/src/main/resources/application.conf (3)
6-9: Verify: Increased connection pool limits.The
max-connectionsandmax-open-requestsare set to 1024, potentially improving concurrency.Ensure that the system can handle the increased load without adverse effects on resource usage.
20-25: Verify: Dispatcher configuration updates.The
fork-join-executorandmy-blocking-dispatcherconfigurations are updated to enhance parallelism and pool size.Ensure that these settings are optimal for the application's workload and resource availability.
Also applies to: 88-88
10-13: Verify: Increased timeout settings.The
idle-timeout,request-timeout, andlinger-timeoutare increased to 60 seconds, enhancing resilience.Ensure that these settings align with the application's performance and error detection requirements.
Verification successful
Consistent Timeout Settings Across Codebase
The
idle-timeout,request-timeout, andlinger-timeoutsettings of 60 seconds are consistently applied across multiple components, suggesting a deliberate configuration strategy. This consistency supports the application's performance and error detection requirements.
- JeMPI_Apps/JeMPI_API/src/main/resources/application.conf
- JeMPI_Apps/JeMPI_Controller/src/main/resources/application.conf
- JeMPI_Apps/JeMPI_ETL/src/main/resources/application.conf
- JeMPI_Apps/JeMPI_BackupRestoreAPI/src/main/resources/application.conf
- JeMPI_Apps/JeMPI_AsyncReceiver/src/main/resources/application.conf
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify timeout settings across the codebase. # Test: Search for timeout configurations. Expect: Consistent timeout settings across components. rg --type conf 'timeout'Length of output: 53
Script:
#!/bin/bash # Description: Verify timeout settings across the codebase. # Test: Search for timeout configurations. Expect: Consistent timeout settings across components. rg 'timeout'Length of output: 5376
JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPMU.java (1)
58-58: Verify: Use of timeout constant.The timeout value is now referenced from
GlobalConstants.TIMEOUT_GENERAL_SECS, improving maintainability.Ensure that this constant is correctly defined and consistently used across the codebase.
Verification successful
Verified: Consistent use of timeout constant.
The
TIMEOUT_GENERAL_SECSconstant is properly defined inGlobalConstants.javaand consistently used across multiple files in the codebase, ensuring maintainability and consistency.
- Defined in:
JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/GlobalConstants.java- Used in:
JeMPI_Apps/JeMPI_LibAPI/src/main/java/org/jembi/jempi/libapi/ProxyRoutes.javaJeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPMU.javaJeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPInteractions.javaJeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Ask.javaJeMPI_Apps/JeMPI_Controller/src/main/java/org/jembi/jempi/controller/BackEnd.javaScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the definition and usage of the timeout constant. # Test: Search for the definition and usage of `TIMEOUT_GENERAL_SECS`. Expect: Consistent usage across the codebase. ast-grep --lang java --pattern $'class GlobalConstants { $$$ public static final int TIMEOUT_GENERAL_SECS = $_; $$$ }'Length of output: 125
Script:
#!/bin/bash # Description: Search for the definition and usage of `TIMEOUT_GENERAL_SECS`. # Search for the definition of TIMEOUT_GENERAL_SECS in GlobalConstants class. rg 'public static final int TIMEOUT_GENERAL_SECS' --context 5 # Search for the usage of TIMEOUT_GENERAL_SECS across the codebase. rg 'TIMEOUT_GENERAL_SECS' --context 2Length of output: 11230
JeMPI_Apps/JeMPI_API_KC/src/main/resources/application.conf (4)
6-8: Review connection pool settings.The addition of
max-connectionsandmax-open-requestsset to 1024 each is aimed at improving the server's capacity to handle concurrent connections. Ensure that the infrastructure can support these limits without resource exhaustion.
115-115: Review blocking dispatcher pool size.The
fixed-pool-sizeformy-blocking-dispatcherhas been increased to 1024. This can improve responsiveness but may also increase resource usage. Ensure that the system can handle the increased number of threads.
23-24: Review dispatcher parallelism settings.The
parallelism-minandparallelism-maxvalues have been set to 8 and 64, respectively. This change aims to enhance concurrent task handling. Verify that these values are optimal for the application's workload and do not lead to excessive thread creation.
11-13: Review timeout settings.The increase in
idle-timeout,request-timeout, andlinger-timeoutto 60 seconds each can help handle slow clients but may also lead to resource contention. Ensure these settings are appropriate for the expected load and client behavior.JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/kafka/MyKafkaConsumerByTopic.java (1)
44-47: Ensure offset commit logic is correct.The
onPartitionsRevokedmethod commits offsets before a rebalance. This is a good practice to ensure data integrity. Verify that this logic aligns with the application's offset management strategy.devops/benchmarking/api-write.js (1)
43-49: Review setup logic for file cleanup.The
setupfunction removes files ifautoCleanis enabled. Ensure that this operation does not unintentionally delete important files.JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/GlobalConstants.java (3)
70-70: LGTM! New Akka timeout constant added.The
TIMEOUT_DGRAPH_AKKA_SECSconstant provides enhanced control over Akka operations involving Dgraph.
72-72: LGTM! But verify the impact of increasing tea time timeout.The
TIMEOUT_TEA_TIME_SECSconstant has been increased from 5 to 30 seconds. This change may affect processes governed by this timeout.
69-69: Verify the impact of setting a fixed Dgraph query timeout.The
TIMEOUT_DGRAPH_QUERY_SECSconstant is now set to a fixed value of 60 seconds, replacing its previous dynamic calculation. Ensure this change aligns with expected query durations.JeMPI_Apps/JeMPI_LibMPI/src/main/java/org/jembi/jempi/libmpi/dgraph/DgraphClient.java (3)
89-106: LGTM! Centralized retry logic improves maintainability.The
runWithRetriesmethod encapsulates retry logic, enhancing maintainability and reducing code duplication.
107-124: LGTM! Refactored read-only transaction method.The
executeReadOnlyTransactionmethod now usesrunWithRetries, simplifying the code and improving readability.
128-145: LGTM! Refactored mutation transaction method.The
doMutateTransactionmethod now usesrunWithRetries, simplifying the code and enhancing error handling.JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/SPInteractions.java (2)
51-76: LGTM! Improved asynchronous handling inlinkPatient.The use of
whenCompleteenhances error handling and responsiveness by adopting a non-blocking approach.
107-110: Verify the impact of commenting outcloseInteractionStream.The
closeInteractionStreammethod has been commented out. Ensure that this does not negatively impact the system's operation.Verification successful
No Impact from Commenting Out
closeInteractionStreamThe
closeInteractionStreammethod is not actively referenced in the codebase, indicating that its removal does not affect current functionality. The method is only mentioned in comments, suggesting it was previously used but is no longer necessary.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the impact of commenting out the `closeInteractionStream` method. # Test: Search for any references to `closeInteractionStream`. Expect: Ensure no critical functionality depends on this method. rg --type java 'closeInteractionStream'Length of output: 423
JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/Ask.java (1)
167-167: Verify the timeout constant usage.The timeout constant
GlobalConstants.TIMEOUT_DGRAPH_AKKA_SECSis used in thelinkInteractionmethod. Ensure that this value is appropriate for the expected response times and aligns with any related configuration or documentation.Verification successful
Verify the definitions of related constants.
It's important to check the definitions of
TIMEOUT_DGRAPH_RECONNECT_RETRIES,TIMEOUT_DGRAPH_QUERY_SECS, andTIMEOUT_DGRAPH_RECONNECT_SLEEP_SECSto ensure the calculated timeout value is appropriate for the system's performance requirements.
Timeout Configuration Verification Successful
The timeout constant
TIMEOUT_DGRAPH_AKKA_SECSis calculated based on reasonable values of related constants. This configuration should be suitable for the expected system performance.
TIMEOUT_DGRAPH_RECONNECT_RETRIES: 5TIMEOUT_DGRAPH_QUERY_SECS: 60 secondsTIMEOUT_DGRAPH_RECONNECT_SLEEP_SECS: 2 secondsThese values contribute to a total timeout of 310 seconds, which seems adequate for handling network interactions with retries.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the usage of the new timeout constant `TIMEOUT_DGRAPH_AKKA_SECS`. # Test: Search for the constant definition and its usage across the codebase. rg --type java 'TIMEOUT_DGRAPH_AKKA_SECS'Length of output: 654
Script:
#!/bin/bash # Description: Verify the definitions of constants used to calculate `TIMEOUT_DGRAPH_AKKA_SECS`. # Test: Search for the definitions of the related constants in the codebase. rg --type java 'TIMEOUT_DGRAPH_RECONNECT_RETRIES|TIMEOUT_DGRAPH_QUERY_SECS|TIMEOUT_DGRAPH_RECONNECT_SLEEP_SECS'Length of output: 7079
devops/JeMPI_TestData/Reference/DataGenerator.py (2)
16-22: CLI argument parsing looks good.The introduction of the
parse_argumentsfunction enhances the script's configurability, making it more user-friendly for generating synthetic datasets.
Line range hint
24-189:
Dynamic dataset generation configuration approved.The refactoring of
generate_datasetto use command-line arguments allows for flexible dataset generation. This change improves the script's usability and maintainability.devops/benchmarking/linker-test.js (2)
5-13: Configuration object is well-structured.The
configobject provides a clear and concise way to manage script parameters, enhancing readability and maintainability.
21-229: Comprehensive benchmarking script.The script effectively automates the benchmarking process, including data generation, file management, and Docker service monitoring. Ensure that the shell commands used are compatible with the target environment.
JeMPI_Apps/JeMPI_Linker/src/main/java/org/jembi/jempi/linker/backend/BackEnd.java (1)
202-227: Enhance error handling inasyncLinkInteractionHandler.The addition of a try-catch block improves the robustness of the method by ensuring that exceptions are logged and a response is sent even if an error occurs. This prevents silent failures and aids in debugging.
JeMPI_Apps/JeMPI_LibAPI/src/main/java/org/jembi/jempi/libapi/ProxyRoutes.java (1)
535-535: Improve maintainability by using a centralized timeout configuration.Replacing the hardcoded timeout with
GlobalConstants.TIMEOUT_GENERAL_SECSenhances flexibility and maintainability, allowing timeout adjustments to be made in a single location.
| const url = 'http://localhost:50000/JeMPI/countInteractions'; | ||
| const payload = JSON.stringify({ | ||
| username: 'test_case', | ||
| password: '1234', | ||
| }); |
There was a problem hiding this comment.
Potential security concern with hardcoded credentials.
The username and password fields in the payload are hardcoded. This is a potential security risk if the script is shared or stored in version control. Consider using environment variables or a secure vault for sensitive information.
- const payload = JSON.stringify({
- username: 'test_case',
- password: '1234',
- });
+ const payload = JSON.stringify({
+ username: __ENV.USERNAME,
+ password: __ENV.PASSWORD,
+ });Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| const url = 'http://localhost:50000/JeMPI/countInteractions'; | |
| const payload = JSON.stringify({ | |
| username: 'test_case', | |
| password: '1234', | |
| }); | |
| const url = 'http://localhost:50000/JeMPI/countInteractions'; | |
| const payload = JSON.stringify({ | |
| username: __ENV.USERNAME, | |
| password: __ENV.PASSWORD, | |
| }); |
| @@ -1,19 +1,32 @@ | |||
| import numpy as np | |||
| import pandas as pd | |||
| import argparse | |||
|
|
|||
| from src.ClinicalDataGenerator import MinimalClinicalDataGenerator | |||
| from src.CorrupterGenerator import Corrupters | |||
| from src.DemographicDataGenerator import PatientGenerator | |||
| from src import helper, basefunctions | |||
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Remove unused import.
The import src.helper is not used in the file and can be removed to clean up the code.
- from src import helper, basefunctions
+ from src import basefunctionsCommittable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| from src import helper, basefunctions | |
| from src import basefunctions |
Tools
Ruff
8-8:
src.helperimported but unusedRemove unused import:
src.helper(F401)
| const brokers = ["kafka-01:9092"]; | ||
| const topic = "JeMPI-interaction-processor-controller"; | ||
|
|
||
| const reader = new Reader({ | ||
| brokers: brokers, | ||
| topic: topic, | ||
| }); |
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Consider parameterizing broker and topic.
Hardcoding the broker and topic limits flexibility. Consider parameterizing these values to allow for different configurations.
-const brokers = ["kafka-01:9092"];
-const topic = "JeMPI-interaction-processor-controller";
+const brokers = __ENV.KAFKA_BROKERS.split(",");
+const topic = __ENV.KAFKA_TOPIC;Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| const brokers = ["kafka-01:9092"]; | |
| const topic = "JeMPI-interaction-processor-controller"; | |
| const reader = new Reader({ | |
| brokers: brokers, | |
| topic: topic, | |
| }); | |
| const brokers = __ENV.KAFKA_BROKERS.split(","); | |
| const topic = __ENV.KAFKA_TOPIC; | |
| const reader = new Reader({ | |
| brokers: brokers, | |
| topic: topic, | |
| }); |
| fi | ||
|
|
||
| # Find the directory name (case-insensitive) | ||
| local app_dir=$(find ../../../JeMPI_Apps/ -maxdepth 1 -type d -iname "jempi_$app" | head -n 1) |
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Avoid masking return values in local variable assignments.
Declare and assign separately to avoid masking return values.
- local app_dir=$(find ../../../JeMPI_Apps/ -maxdepth 1 -type d -iname "jempi_$app" | head -n 1)
+ local app_dir
+ app_dir=$(find ../../../JeMPI_Apps/ -maxdepth 1 -type d -iname "jempi_$app" | head -n 1)Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| local app_dir=$(find ../../../JeMPI_Apps/ -maxdepth 1 -type d -iname "jempi_$app" | head -n 1) | |
| local app_dir | |
| app_dir=$(find ../../../JeMPI_Apps/ -maxdepth 1 -type d -iname "jempi_$app" | head -n 1) |
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Shellcheck
[warning] 34-34: Declare and assign separately to avoid masking return values.
(SC2155)
| if [[ " ${valid_apps[@]} " =~ " ${app} " ]]; then | ||
| process_app $app | ||
| else | ||
| invalid_apps+=($app) |
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Quote to prevent word splitting/globbing.
Quote the variable to prevent word splitting or globbing.
- invalid_apps+=($app)
+ invalid_apps+=("$app")Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| invalid_apps+=($app) | |
| invalid_apps+=("$app") |
Tools
Shellcheck
[warning] 84-84: Quote to prevent word splitting/globbing, or split robustly with mapfile or read -a.
(SC2206)
|
|
||
| # Notify user of invalid apps | ||
| if [ ${#invalid_apps[@]} -ne 0 ]; then | ||
| echo "The following apps are not valid and were ignored: ${invalid_apps[@]}" |
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Fix argument mixing string and array.
The argument mixes string and array. Use * or separate argument.
- echo "The following apps are not valid and were ignored: ${invalid_apps[@]}"
+ echo "The following apps are not valid and were ignored: ${invalid_apps[*]}"Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| echo "The following apps are not valid and were ignored: ${invalid_apps[@]}" | |
| echo "The following apps are not valid and were ignored: ${invalid_apps[*]}" |
Tools
Shellcheck
[error] 92-92: Argument mixes string and array. Use * or separate argument.
(SC2145)
| sleep 1 | ||
|
|
||
| for app in "$@"; do | ||
| if [[ " ${valid_apps[@]} " =~ " ${app} " ]]; then |
There was a problem hiding this comment.
Fix array comparison in conditional.
The array comparison in the conditional is incorrect. Use a loop or explicit * instead of @.
- if [[ " ${valid_apps[@]} " =~ " ${app} " ]]; then
+ if [[ " ${valid_apps[*]} " =~ (^|[[:space:]])"${app}"($|[[:space:]]) ]]; thenCommittable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| if [[ " ${valid_apps[@]} " =~ " ${app} " ]]; then | |
| if [[ " ${valid_apps[*]} " =~ (^|[[:space:]])"${app}"($|[[:space:]]) ]]; then |
Tools
Shellcheck
[error] 81-81: Arrays implicitly concatenate in [[ ]]. Use a loop (or explicit * instead of @).
(SC2199)
[warning] 81-81: Remove quotes from right-hand side of =~ to match as a regex rather than literally.
(SC2076)
| local name=$(docker ps -f name=$service --format "{{.Names}}") | ||
| local scale=$(docker service inspect --format='{{.Spec.Mode.Replicated.Replicas}}' $service || echo 1) |
There was a problem hiding this comment.
Avoid masking return values in local variable assignments.
Declare and assign separately to avoid masking return values.
- local name=$(docker ps -f name=$service --format "{{.Names}}")
- local scale=$(docker service inspect --format='{{.Spec.Mode.Replicated.Replicas}}' $service || echo 1)
+ local name
+ name=$(docker ps -f name=$service --format "{{.Names}}")
+ local scale
+ scale=$(docker service inspect --format='{{.Spec.Mode.Replicated.Replicas}}' $service || echo 1)Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| local name=$(docker ps -f name=$service --format "{{.Names}}") | |
| local scale=$(docker service inspect --format='{{.Spec.Mode.Replicated.Replicas}}' $service || echo 1) | |
| local name | |
| name=$(docker ps -f name=$service --format "{{.Names}}") | |
| local scale | |
| scale=$(docker service inspect --format='{{.Spec.Mode.Replicated.Replicas}}' $service || echo 1) |
Tools
Shellcheck
[warning] 24-24: Declare and assign separately to avoid masking return values.
(SC2155)
[warning] 25-25: Declare and assign separately to avoid masking return values.
(SC2155)
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Actionable comments posted: 0
Review details
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Review profile: CHILL
Files selected for processing (1)
- devops/JeMPI_TestData/Reference/DataGenerator.py (4 hunks)
Additional context used
Ruff
devops/JeMPI_TestData/Reference/DataGenerator.py
8-8:
src.helperimported but unusedRemove unused import:
src.helper(F401)
Additional comments not posted (5)
devops/JeMPI_TestData/Reference/DataGenerator.py (5)
8-8: Remove unused import.The import
src.helperis not used in the file and can be removed to clean up the code.Tools
Ruff
8-8:
src.helperimported but unusedRemove unused import:
src.helper(F401)
10-14: Default values are well-defined.The default values for the command-line arguments are clearly defined and enhance configurability.
16-22: Argument parsing is correctly implemented.The function
parse_argumentssets up command-line argument parsing with appropriate defaults and descriptions.
Line range hint
24-189: Dynamic configuration of dataset generation is well-implemented.The function
generate_dataseteffectively uses command-line arguments for dynamic configuration, improving flexibility and maintainability. The use of a random seed ensures reproducibility.
191-194: Main execution flow is correctly implemented.The
mainfunction correctly orchestrates argument parsing and dataset generation, enhancing the script's usability.
…mbi/JeMPI into CU-86bz306ft_Benchmark-Linker-and-API
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Files selected for processing (3)
- .github/workflows/entry-on-merge.yml (1 hunks)
- .github/workflows/entry-on-release.yml (1 hunks)
- devops/linux/docker/data-config/config.json (1 hunks)
Files skipped from review due to trivial changes (1)
- devops/linux/docker/data-config/config.json
Additional comments not posted (2)
.github/workflows/entry-on-release.yml (1)
Line range hint
38-44:
Verify alternative credential management.The removal of
secretsfordocker-usernameanddocker-passwordsuggests a change in how credentials are managed. Ensure that an alternative method, such as environment variables or a different secrets management approach, is implemented to maintain authentication with Docker Hub..github/workflows/entry-on-merge.yml (1)
Line range hint
38-44:
Verify alternative credential management.The removal of
secretsfordocker-usernameanddocker-passwordsuggests a change in how credentials are managed. Ensure that an alternative method, such as environment variables or a different secrets management approach, is implemented to maintain authentication with Docker Hub.
Summary by CodeRabbit
New Features
Bug Fixes
Chores
--no-cacheoption.Refactor