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Kegg pathway viewer based on sigma.js and Linkurious plugins

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Kepavi

KEgg PAthway VIewer based on cytoscape.js sigmajs and some Linkurious plugins.

  • Performs flux balance analysis using cobrapy and maps results onto pathways.
  • Visualize whole genome based models using Biomodels.
  • Visualize pathways using KEGG layout.
  • 2600 available genome based models.

Why another pathway viewer ?

Because Kegg pathway viewer are complete but not very beautiful.

Alternatives

Future

Add metabolomics data processing functionalities like peaklist deisotoping, adducts/fragments annotation using mzOS

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Kegg pathway viewer based on sigma.js and Linkurious plugins

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