Program which evolves a protein chain based on a hidden Markov model.
Java
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README

peyo is a program which evolves protein chains which match a given hidden
Markov model.

This software is released under the GPLv3; see COPYING for more information.

See "http://wiki.github.com/jfinkels/peyo" for more information on using this 
project. For the impatient, read on.

To build this package as a JAR, run

  mvn package

To prepare this package for development in Eclipse (if you wish to do so), run

  mvn eclipse:eclipse -DdownloadSources=true -DdownloadJavadocs=true

and

  mvn eclipse:configure-workspace -Declipse.workspace=/path/to/workspace

Eclipse automatic source formatting rules can be found in "formatter.xml" in
the top-level directory of this project.

Checkstyle rules can be found in "checkstyle.xml" in the top-level directory of
this project.