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peyo is a program which evolves protein chains which match a given hidden Markov model. This software is released under the GPLv3; see COPYING for more information. See "http://wiki.github.com/jfinkels/peyo" for more information on using this project. For the impatient, read on. To build this package as a JAR, run mvn package To prepare this package for development in Eclipse (if you wish to do so), run mvn eclipse:eclipse -DdownloadSources=true -DdownloadJavadocs=true and mvn eclipse:configure-workspace -Declipse.workspace=/path/to/workspace Eclipse automatic source formatting rules can be found in "formatter.xml" in the top-level directory of this project. Checkstyle rules can be found in "checkstyle.xml" in the top-level directory of this project.