Pavia 2018

Please download this repository and open the RStudio project file pavia-2018.Rproj.

In addition to the rstan package, which you should already have installed (if not see https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started), please install the following packages if not already installed:

packages <- c(
    'bayesplot', 
    'ggplot2', 
    'lubridate', 
    'rmarkdown', 
    'shinystan', 
    'tidyverse', 
    'rmarkdown'
)
install.packages(packages)

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Reading list

See the reading-list.pdf or reading-list.html files in the extra-topics folder.

MCMC demo website

https://chi-feng.github.io/mcmc-demo/app.html

Turn off compiler warnings

http://mc-stan.org/misc/warnings.html#compiler-warnings