BEAKER

Implementation of BEAKER Machine Learning Model by Joseph Guhlin and Rachael Ashby.

More info coming soon

Code Format

We use python black code formatter for this repo.

Name		Name	Last commit message	Last commit date
Latest commit History 78 Commits
biobeaker		biobeaker
book		book
example		example
experiments		experiments
models		models
precomputed		precomputed
pub/notebooks		pub/notebooks
tests		tests
weights_calculation		weights_calculation
.gitattributes		.gitattributes
.gitignore		.gitignore
.travis.yml		.travis.yml
Beaker Initial Notebook.ipynb		Beaker Initial Notebook.ipynb
BioBeaker_Initial_Notebook_Playground.ipynb		BioBeaker_Initial_Notebook_Playground.ipynb
CITATION.cff		CITATION.cff
README.md		README.md
Synteny_Plots.ipynb		Synteny_Plots.ipynb
beaker_export_generator.py		beaker_export_generator.py
beaker_tripleloss_medium_2023.py		beaker_tripleloss_medium_2023.py
beaker_tripleloss_medium_2023_generator.py		beaker_tripleloss_medium_2023_generator.py
beaker_tripleloss_medium_2023_generator_export.py		beaker_tripleloss_medium_2023_generator_export.py
beaker_tripleloss_medium_2023_generator_k6.py		beaker_tripleloss_medium_2023_generator_k6.py
poetry.lock		poetry.lock
pyproject.toml		pyproject.toml
pyracular_fastakmersgenerator_t_e_s_t.py		pyracular_fastakmersgenerator_t_e_s_t.py
requirements.txt		requirements.txt
setup.cfg		setup.cfg
test_pyracular_fastakmersgenerator.py		test_pyracular_fastakmersgenerator.py