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Tumoroscope in PyMC #2

Merged
merged 21 commits into from
Oct 25, 2022
Merged

Tumoroscope in PyMC #2

merged 21 commits into from
Oct 25, 2022

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jhrcook
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@jhrcook jhrcook commented Oct 25, 2022

  • add model constructor
  • add input data class
  • README documentation of background, installation, use, and developer instructions
  • tests (with tox command)
  • README build system ( with tox command)
  • metadata (e.g. CITATION file)

@jhrcook
feat: copy code from my notebook in another repo
6665a83
@jhrcook
feat: basic features for building data and model
4bdfdcc
@jhrcook
test: basic test of building and sampling from model
1991ef0
@jhrcook
test: tox for tests
82ad04b
@jhrcook
doc: README built from notebooks
a902b1d
@jhrcook
test: GH Action for CI
f3fad28
@jhrcook
test: do not test on python 3.11
334f6df
@jhrcook
doc: update README with GH CI badge and pre-commit hooks for nbqa
3689732
@jhrcook
refactor: move data validation into TumoroscopeData class
3e79128
@jhrcook
test: begin testing data validation
c5e89f9
@jhrcook
test: finish tests for TumoroscopeData
93dea10
@jhrcook
feat: generate simulated data
b345b41
@jhrcook
test: generation of simulated data
461bd47
@jhrcook
chore: add seaborn to env and install package local and editable, upd…
d844f37 
…ate dep version specs
@jhrcook
chore: update pyproject to include only specific parts in package
7fcfa2c
@jhrcook
test: run pytest in prallel, update README build
9a5d427
@jhrcook
fix: tox README build process
dd327d5
@jhrcook
feat: str and repr functions for TumoroscopeData
2c73c24
@jhrcook
doc: full example in README
8708a0c
@jhrcook
doc: add text to README example and finish rest of README details
f806332
@jhrcook
doc: increment version to first release and add CITATION.cff
1d25b86
@jhrcook jhrcook added the enhancement New feature or request label Oct 25, 2022
@jhrcook jhrcook self-assigned this Oct 25, 2022
jhrcook
jhrcook commented Oct 25, 2022
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Good to go.

@jhrcook jhrcook merged commit ae499ba into master Oct 25, 2022
@jhrcook jhrcook deleted the dev branch October 25, 2022 16:23
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