TSNAD v2.0.1

replace SOAP-HLA and Kourami with OptiType (HLA typing)
the version of each tool is listed as follows:
Trimmomatic 0.39
BWA 0.7.17
SAMtools 1.13
GATK 4.2.0.0
VEP 104
Hisat2 2.2.1
Stringtie 2.1.6
OptiType 1.3.5
STAR 2.7
Arriba 1.1.0
DeepHLApan 1.1

TSNAD v2.0

2019.09

provide the neoantigen prediction from indel and gene fusion
replace NetMHCpan with DeepHLApan
provide the docker version of TSNAD
provide the web-service of TSNAD (http://biopharm.zju.edu.cn/tsnad/)

TSNAD v1.2

V1.2
2019.5

VEP v94 -> v96
Add the selection of hg38 when calling mutations.

TSNAD v1.1

V1.1
Trimmomatic v0.35 -> v0.38
BWA v0.7.12 -> v0.7.17
Samtools v1.3 -> v1.9
Picard v1.140 -> embedded in GATK
GATK v3.5 -> v4.0.11.0
Annovar -> VEP v94
NetMHCpan v2.8 -> v4.0
Add the function of RNA-seq analysis for neoantigen filter.

TSNAD v1.0

V1.0
GUI for neoantigen prediction
Two parts: one for somatic mutation detection, another for HLA-peptide binding prediction.