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1. ConfusionMatrix_Dice_Recall_with-cupy ConfusionMatrix_Dice_Recall_with-cupy Public

   Scikitlearn 'confusion matrix' extraction is very slow for digital pathology images of 30k x 30k pixels. Instead cupy library with matrix multiplication could be used to speed up the calculation.

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2. Load_AVI_convert_nifti Load_AVI_convert_nifti Public

   load avi file and convert to nifti

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3. XML_Annotation_modify_with_Python XML_Annotation_modify_with_Python Public

   XML annotation format commonly used Imagescope and modyfying color of annotation for every object could be cumbersome. This script helps to change the color of annotation and could be useful to ada…

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4. XML_to_Binarymask_withPython XML_to_Binarymask_withPython Public

   This script helps to create binary mask files from XML based on the color of annotation. If you want to change the color of annotation, refer to another code in my repository for XML modification.

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5. Bland-altman-Plot-changes Bland-altman-Plot-changes Public

   This pip install pycompare has default bland altman plot that makes difficult to make changes in graphic for visualization

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