hdReports

The goal of hdReports is to supply Rmarkdown templates for 3 occasions:

• A Bachelor’s or Master’s thesis at Heidelberg University in the faculty of Biology and Chemistry
• A research report for the Heidelberg Institute for Theoretical Studies (HITS)
• A research presentation for the Heidelberg Institute for Theoretical Studies (HITS)

Installation

You can install hdReports from GitHub with:

# install.packages("remotes")
remotes::install_github("jmbuhr/hdReports")

Or even better: Use the renv package to manage your dependencies and use:

renv::install("jmbuhr/hdReports")

Learn more about renv here

Usage

Templates

In Rstudio create a new Rmarkdown file and choose From Template. There you will find:

• Heidelberg Thesis
• HITS Research Report
• HITS Research Presentation

This is what parts of the Research Report look like:

Embedding protein structures from RCSB with mol*

Keep this code at the top of your document:

hdReports::init_molstar()

Then embed structures with:

hdReports::include_structure("1Q2W")

They will only appear in the html version.