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errors with HNN GUI installation #324

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stephanie-r-jones opened this issue Jul 26, 2022 · 2 comments
Closed

errors with HNN GUI installation #324

stephanie-r-jones opened this issue Jul 26, 2022 · 2 comments

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@stephanie-r-jones
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HNN GUI was working on my mac after pip installation but II haven't run it in a while and now ran into the following into errors:


Fatal Python error: initfsencoding: "unable to load the file system codec
ModuleNotFoundError: No module named 'encodings'
Current thread 0x000000010807f5c0 (most recent call first):
Abort trap: 6


I then went back and ran a pre-install check and received the following warnings:


Checking PYTHONPATH environment variable is not set...warning
NEURON libraries found in PYTHONPATH variable. This was used before
the 'pip install' method. Make sure this matches the version used to
compile HNN modules with 'make'
PYTHONPATH=/Applications/NEURON-7.8/lib/python:

Checking PYTHONHOME environment variable is not set...warning

PYTHONHOME is set. This is not the recommended way to set the python environment.
Make sure that this is the correct environment to run HNN.
PYTHONHOME=/Applications/anaconda
Fatal Python error: initfsencoding: unable to load the file system codec
ModuleNotFoundError: No module named 'encodings'

Current thread 0x00000001079125c0 (most recent call first):
Python version:

Checking NRN_PYLIB environment variable is not set...ok
Checking for existing hnn directory...found
Existing HNN source code directory found at /Users/stephaniejones/hnn_new
Optional: use this directory instead of step "Download HNN source code"


@jasmainak
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jasmainak commented Jul 26, 2022

can you say what are the following variables:

$ echo PYTHONHOME
$ echo PYTHONPATH
$ which python

@stephanie-r-jones
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stephanie-r-jones commented Jul 26, 2022 via email

@jonescompneurolab jonescompneurolab locked and limited conversation to collaborators Jul 27, 2022
@jasmainak jasmainak converted this issue into discussion #325 Jul 27, 2022

This issue was moved to a discussion.

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