This repoistory accompanies a manuscript describing the role of the protein Asterix/Gtsf1 in the silencing of retrotranspons.
Code, processing, and gene annotations can be found according to the folders described below.
Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons
Jonathan J. Ipsaro, Paul A. O'Brien, Shibani Bhattacharya, Arthur G. Palmer 3rd, Leemor Joshua-Tor
Cell Rep. 2021 Mar 30;34(13):108914. doi: 10.1016/j.celrep.2021.108914.
PMID: 33789107
Customized gene annotations for both the mouse mm10 and Drosophila dm6 assemblies
Scripts for processing enhanced crosslinking IP datasets (both in mouse and Drosophila)
Scripts for straighforward analysis of RNA libraries from pull-down experiments