RCy3 vignettes + Cytoscape plugin walkthroughs using CyREST

Google summer of code project for enhancing vignettes in RCy3 for use with Cytoscape.

Name		Name	Last commit message	Last commit date
Latest commit History 118 Commits
blog_post_drafts		blog_post_drafts
cluster_maker_cache/html		cluster_maker_cache/html
data		data
functions_to_add_to_RCy3		functions_to_add_to_RCy3
inst/data-raw		inst/data-raw
testing_sending_data_edge_and_node_data_to_Cy		testing_sending_data_edge_and_node_data_to_Cy
weekly_reports		weekly_reports
.gitignore		.gitignore
EM_1.png		EM_1.png
EM_1_gridded.png		EM_1_gridded.png
EM_1_kamada-kawai.png		EM_1_kamada-kawai.png
EM_ex_4.png		EM_ex_4.png
EM_ex_6.png		EM_ex_6.png
README.md		README.md
chemviz_legend.png		chemviz_legend.png
chemviz_similarity_net.png		chemviz_similarity_net.png
chemviz_similarity_net_coloured_by_MOA.png		chemviz_similarity_net_coloured_by_MOA.png
chemviz_similarity_net_layout_fd.png		chemviz_similarity_net_layout_fd.png
chemviz_similarity_net_node_structures.png		chemviz_similarity_net_node_structures.png
chemviz_vignette.Rmd		chemviz_vignette.Rmd
chemviz_vignette.md		chemviz_vignette.md
chemviz_vignette.pdf		chemviz_vignette.pdf
cluster_maker.Rmd		cluster_maker.Rmd
cluster_maker.md		cluster_maker.md
clustermaker_clusters_viz1.png		clustermaker_clusters_viz1.png
clustermaker_clusters_viz2.png		clustermaker_clusters_viz2.png
co-occur0.png		co-occur0.png
co-occur0_1.png		co-occur0_1.png
co-occur1.png		co-occur1.png
co-occur2.png		co-occur2.png
co-occur3.png		co-occur3.png
co-occur_degree.png		co-occur_degree.png
co-occur_subnet.png		co-occur_subnet.png
co-occurrence_vignette.bib		co-occurrence_vignette.bib
coloured_paxtoolsr_ex.png		coloured_paxtoolsr_ex.png
em_autoannotate_manual_shot1.png		em_autoannotate_manual_shot1.png
em_word_cloud_manual_shot.png		em_word_cloud_manual_shot.png
installing_software.Rmd		installing_software.Rmd
nodes_for_chemviz.png		nodes_for_chemviz.png
pathway_commons_gq.png		pathway_commons_gq.png
paxtoolsR_metadata_colour_legend.png		paxtoolsR_metadata_colour_legend.png
paxtoolsR_vignette.Rmd		paxtoolsR_vignette.Rmd
paxtoolsR_vignette.md		paxtoolsR_vignette.md
paxtoolsR_vignette.pdf		paxtoolsR_vignette.pdf
paxtools_met_path_1.png		paxtools_met_path_1.png
paxtoolsr.bib		paxtoolsr.bib
recreating_enrichment_map_vignette.Rmd		recreating_enrichment_map_vignette.Rmd
recreating_enrichment_map_vignette.md		recreating_enrichment_map_vignette.md
recreating_enrichment_map_vignette.pdf		recreating_enrichment_map_vignette.pdf
recreating_enrichment_map_vignette_part2.Rmd		recreating_enrichment_map_vignette_part2.Rmd
recreating_enrichment_map_vignette_part2.md		recreating_enrichment_map_vignette_part2.md
subnet_pathway_commons_gq.png		subnet_pathway_commons_gq.png
tara_oceans_co-occurence_net_RCy3_vignette.Rmd		tara_oceans_co-occurence_net_RCy3_vignette.Rmd
tara_oceans_co-occurence_net_RCy3_vignette.md		tara_oceans_co-occurence_net_RCy3_vignette.md
tara_oceans_co-occurence_net_RCy3_vignette.pdf		tara_oceans_co-occurence_net_RCy3_vignette.pdf
timeline.Md		timeline.Md

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