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gsoc project to enhance vignettes in R package RCy3 for use with Cytoscape

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blog_post_drafts
blog_post_drafts
 
 
cluster_maker_cache/html
cluster_maker_cache/html
 
 
data
data
 
 
functions_to_add_to_RCy3
functions_to_add_to_RCy3
 
 
inst/data-raw
inst/data-raw
 
 
testing_sending_data_edge_and_node_data_to_Cy
testing_sending_data_edge_and_node_data_to_Cy
 
 
weekly_reports
weekly_reports
 
 
.gitignore
.gitignore
 
 
EM_1.png
EM_1.png
 
 
EM_1_gridded.png
EM_1_gridded.png
 
 
EM_1_kamada-kawai.png
EM_1_kamada-kawai.png
 
 
EM_ex_4.png
EM_ex_4.png
 
 
EM_ex_6.png
EM_ex_6.png
 
 
README.md
README.md
 
 
chemviz_legend.png
chemviz_legend.png
 
 
chemviz_similarity_net.png
chemviz_similarity_net.png
 
 
chemviz_similarity_net_coloured_by_MOA.png
chemviz_similarity_net_coloured_by_MOA.png
 
 
chemviz_similarity_net_layout_fd.png
chemviz_similarity_net_layout_fd.png
 
 
chemviz_similarity_net_node_structures.png
chemviz_similarity_net_node_structures.png
 
 
chemviz_vignette.Rmd
chemviz_vignette.Rmd
 
 
chemviz_vignette.md
chemviz_vignette.md
 
 
chemviz_vignette.pdf
chemviz_vignette.pdf
 
 
cluster_maker.Rmd
cluster_maker.Rmd
 
 
cluster_maker.md
cluster_maker.md
 
 
clustermaker_clusters_viz1.png
clustermaker_clusters_viz1.png
 
 
clustermaker_clusters_viz2.png
clustermaker_clusters_viz2.png
 
 
co-occur0.png
co-occur0.png
 
 
co-occur0_1.png
co-occur0_1.png
 
 
co-occur1.png
co-occur1.png
 
 
co-occur2.png
co-occur2.png
 
 
co-occur3.png
co-occur3.png
 
 
co-occur_degree.png
co-occur_degree.png
 
 
co-occur_subnet.png
co-occur_subnet.png
 
 
co-occurrence_vignette.bib
co-occurrence_vignette.bib
 
 
coloured_paxtoolsr_ex.png
coloured_paxtoolsr_ex.png
 
 
em_autoannotate_manual_shot1.png
em_autoannotate_manual_shot1.png
 
 
em_word_cloud_manual_shot.png
em_word_cloud_manual_shot.png
 
 
installing_software.Rmd
installing_software.Rmd
 
 
nodes_for_chemviz.png
nodes_for_chemviz.png
 
 
pathway_commons_gq.png
pathway_commons_gq.png
 
 
paxtoolsR_metadata_colour_legend.png
paxtoolsR_metadata_colour_legend.png
 
 
paxtoolsR_vignette.Rmd
paxtoolsR_vignette.Rmd
 
 
paxtoolsR_vignette.md
paxtoolsR_vignette.md
 
 
paxtoolsR_vignette.pdf
paxtoolsR_vignette.pdf
 
 
paxtools_met_path_1.png
paxtools_met_path_1.png
 
 
paxtoolsr.bib
paxtoolsr.bib
 
 
recreating_enrichment_map_vignette.Rmd
recreating_enrichment_map_vignette.Rmd
 
 
recreating_enrichment_map_vignette.md
recreating_enrichment_map_vignette.md
 
 
recreating_enrichment_map_vignette.pdf
recreating_enrichment_map_vignette.pdf
 
 
recreating_enrichment_map_vignette_part2.Rmd
recreating_enrichment_map_vignette_part2.Rmd
 
 
recreating_enrichment_map_vignette_part2.md
recreating_enrichment_map_vignette_part2.md
 
 
subnet_pathway_commons_gq.png
subnet_pathway_commons_gq.png
 
 
tara_oceans_co-occurence_net_RCy3_vignette.Rmd
tara_oceans_co-occurence_net_RCy3_vignette.Rmd
 
 
tara_oceans_co-occurence_net_RCy3_vignette.md
tara_oceans_co-occurence_net_RCy3_vignette.md
 
 
tara_oceans_co-occurence_net_RCy3_vignette.pdf
tara_oceans_co-occurence_net_RCy3_vignette.pdf
 
 
timeline.Md
timeline.Md
 
 

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gsoc project to enhance vignettes in R package RCy3 for use with Cytoscape

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