/gsoc_Rcy3_vignettes

gsoc project to enhance vignettes in R package RCy3 for use with Cytoscape
  1. R 75.9%
  2. TeX 24.1%
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blog_post_drafts
cluster_maker_cache/html
data
functions_to_add_to_RCy3
inst/data-raw
testing_sending_data_edge_and_node_data_to_Cy
weekly_reports
.gitignore
EM_1.png
EM_1_gridded.png
EM_1_kamada-kawai.png
EM_ex_4.png
EM_ex_6.png
README.md
chemviz_legend.png
chemviz_similarity_net.png
chemviz_similarity_net_coloured_by_MOA.png
chemviz_similarity_net_layout_fd.png
chemviz_similarity_net_node_structures.png
chemviz_vignette.Rmd
chemviz_vignette.md
chemviz_vignette.pdf
cluster_maker.Rmd
cluster_maker.md
clustermaker_clusters_viz1.png
clustermaker_clusters_viz2.png
co-occur0.png
co-occur0_1.png
co-occur1.png
co-occur2.png
co-occur3.png
co-occur_degree.png
co-occur_subnet.png
co-occurrence_vignette.bib
coloured_paxtoolsr_ex.png
em_autoannotate_manual_shot1.png
em_word_cloud_manual_shot.png
installing_software.Rmd
nodes_for_chemviz.png
pathway_commons_gq.png
paxtoolsR_metadata_colour_legend.png
paxtoolsR_vignette.Rmd
paxtoolsR_vignette.md
paxtoolsR_vignette.pdf
paxtools_met_path_1.png
paxtoolsr.bib
recreating_enrichment_map_vignette.Rmd
recreating_enrichment_map_vignette.md
recreating_enrichment_map_vignette.pdf
recreating_enrichment_map_vignette_part2.Rmd
recreating_enrichment_map_vignette_part2.md
subnet_pathway_commons_gq.png
tara_oceans_co-occurence_net_RCy3_vignette.Rmd
tara_oceans_co-occurence_net_RCy3_vignette.md
tara_oceans_co-occurence_net_RCy3_vignette.pdf
timeline.Md

README.md