Black box titles for multiclass histograms (#24)

* update readme

* add black boxes to histplot, update test

Author: joshuawe

README.md

@@ -64,9 +64,9 @@ Furthermore, this library presents other useful visualizations, such as **compar
 |                    ROC Curve (AUROC) with bootstrapping             |                 Precision-Recall Curve                          |                  y_prob histogram                                 |
 
 
-| <img src="https://github.com/joshuawe/plots_and_graphs/blob/main/images/raincloud.png?raw=true" width="300" alt="Your Image">        |  <img src="data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7" width="300" height="300" alt=""> | <img src="data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7" width="300" height="300" alt=""> |
+| <img src="https://github.com/joshuawe/plots_and_graphs/blob/main/images/multiclass/histogram_4_classes.png?raw=true" width="300" alt="Your Image">        |  <img src="https://github.com/joshuawe/plots_and_graphs/blob/main/images/multiclass/roc_curves_multiclass.png?raw=true" width="300" alt=""> | <img src="data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7" width="300" height="300" alt=""> |
 |:--------------------------------------------------:|:-------------------------------------------------:| :-------------------------------------------------:|
-|                    Raincloud              |                                                | |
+|                    Histogram (y_scores)              |    ROC curves (AUROC) with bootstrapping                                            | |
 
 
 

images/multiclass/histogram_4_classes.png

@@ -20,7 +20,7 @@
 from sklearn.utils import resample
 from tqdm import tqdm
 
-from plotsandgraphs.utils import bootstrap, set_black_title_box, scale_ax_bbox, get_cmap
+from plotsandgraphs.utils import bootstrap, set_black_title_boxes, scale_ax_bbox, get_cmap
 
 
 def plot_roc_curve(
@@ -32,7 +32,7 @@ def plot_roc_curve(
     figsize: Optional[Tuple[float, float]] = None,
     class_labels: Optional[List[str]] = None,
     split_plots: bool = True,
-    save_fig_path=Optional[Union[str, Tuple[str, str]]],
+    save_fig_path:Optional[Union[str, Tuple[str, str]]] = None,
 ) -> Tuple[Figure, Union[Figure, None]]:
     """
     Creates two plots.
@@ -188,22 +188,11 @@ def roc_metric_function(y_true, y_score):
     for i in range(num_classes, len(axes.flat)):
         axes.flat[i].axis("off")
 
-    # make the subplot tiles (and black boxes)
-    for i in range(num_classes):
-        set_black_title_box(axes.flat[i], f"Class {i}")
-    plt.tight_layout(h_pad=1.5)
-    # make the subplot tiles (and black boxes)
-    #  First time to get the approx. correct spacing with plt.tight_layout()
-    #  Second time to get the correct width of the black box
-    #  Thank you matplotlib ...
-    for i in range(num_classes):
-        set_black_title_box(
-            axes.flat[i],
-            f"Class {i}",
-            set_title_kwargs={
-                "fontdict": {"fontname": "Arial Black", "fontweight": "bold"}
-            },
-        )
+    # create the subplot tiles (and black boxes)
+    set_black_title_boxes(axes.flat[:num_classes], class_labels)
+        
+    
+       
 
     # ---------- AUROC overview plot comparing classes ----------
     # Make an AUROC overview plot comparing the aurocs per class and combined
@@ -281,13 +270,12 @@ def auroc_metric_function(y_true, y_score, average, multi_class):
 def plot_y_prob_histogram(
     y_true: np.ndarray, y_prob: Optional[np.ndarray] = None, save_fig_path=None
 ) -> Figure:
+    num_classes = y_true.shape[-1]
+    class_labels = [f"Class {i}" for i in range(num_classes)]
+    
     # Aiming for a square plot
-    plot_cols = np.ceil(np.sqrt(y_true.shape[-1])).astype(
-        int
-    )  # Number of plots in a row
-    plot_rows = np.ceil(y_true.shape[-1] / plot_cols).astype(
-        int
-    )  # Number of plots in a column
+    plot_cols = np.ceil(np.sqrt(num_classes)).astype(int)  # Number of plots in a row # noqa
+    plot_rows = np.ceil(num_classes / plot_cols).astype(int)  # Number of plots in a column # noqa
     fig, axes = plt.subplots(
         nrows=plot_rows,
         ncols=plot_cols,
@@ -298,11 +286,11 @@ def plot_y_prob_histogram(
     plt.suptitle("Predicted probability histogram")
 
     # Flatten axes if there is only one class, even though this function is designed for multiclasses
-    if y_true.shape[-1] == 1:
+    if num_classes == 1:
         axes = np.array([axes])
 
     for i, ax in enumerate(axes.flat):
-        if i >= y_true.shape[-1]:
+        if i >= num_classes:
             ax.axis("off")
             continue
 
@@ -327,7 +315,7 @@ def plot_y_prob_histogram(
                 linewidth=2,
                 rwidth=1,
             )
-            ax.set_title(f"Class {i}")
+            ax.set_title(class_labels[i])
             ax.set_xlim((-0.005, 1.0))
             # if subplot in first column
             if (i % plot_cols) == 0:
@@ -342,7 +330,8 @@ def plot_y_prob_histogram(
             if i == 0:
                 ax.legend()
 
-    plt.tight_layout()
+    # create the subplot tiles (and black boxes)
+    set_black_title_boxes(axes.flat[:num_classes], class_labels)
 
     # save plot
     if save_fig_path is not None:

notebooks/multiclass_classification.ipynb

@@ -1,7 +1,8 @@
-from typing import Optional, List, Callable, Dict, Tuple, Union, TYPE_CHECKING
+from typing import Optional, List, Callable, Dict, Tuple, Union, TYPE_CHECKING, Literal
 from tqdm import tqdm
 from sklearn.utils import resample
 import numpy as np
+import matplotlib.pyplot as plt
 from matplotlib.path import Path
 from matplotlib.patches import BoxStyle
 from matplotlib.colors import LinearSegmentedColormap
@@ -99,8 +100,9 @@ def __call__(self, x0, y0, width, height, mutation_size):
                     closed=True)
 
 
-def set_black_title_box(ax: "Axes", title=str, backgroundcolor='black', color='white', set_title_kwargs: Dict={}):
+def _set_black_title_box(ax: "Axes", title:str, backgroundcolor='black', color='white', title_kwargs: Optional[Dict]=None):
     """
+    Note: Do not use this function by itself, instead use `set_black_title_boxes()`.
     Sets the title of the given axes with a black bounding box.
     Note: When using `plt.tight_layout()` the box might not have the correct width. First call `plt.tight_layout()` and then `set_black_title_box()`.
 
@@ -111,14 +113,50 @@ def set_black_title_box(ax: "Axes", title=str, backgroundcolor='black', color='w
     - color: The color of the title text (default: 'white').
     - set_title_kwargs: Keyword arguments to pass to `ax.set_title()`.
     """
+    if title_kwargs is None:
+        title_kwargs = {'fontdict': {"fontname": "Arial Black", "fontweight": "bold"}}
     BoxStyle._style_list["ext"] = ExtendedTextBox_v2 
     ax_width = ax.get_window_extent().width
     # make title with black bounding box
-    title = ax.set_title(title, backgroundcolor=backgroundcolor, color=color, **set_title_kwargs)
-    bb = title.get_bbox_patch() # get bbox from title
+    title_instance = ax.set_title(title, backgroundcolor=backgroundcolor, color=color, **title_kwargs)
+    bb = title_instance.get_bbox_patch() # get bbox from title
     bb.set_boxstyle("ext", pad=0.1, width=ax_width) # use custom style
 
 
+def set_black_title_boxes(axes: "np.ndarray[Axes]", titles: List[str], backgroundcolor='black', color='white', title_kwargs: Optional[Dict]=None, tight_layout_kwargs: Dict={}):
+    """
+    Creates black boxes for the subtitles above the given axes with the given titles. The subtitles are centered above the axes.
+
+    Parameters
+    ----------
+    axes : np.ndarray["Axes"]
+        np.ndarray of matplotlib.axes.Axes objects. (Usually returned by plt.subplots() call)
+    titles : List[str]
+        List of titles for the axes. Same length as axes.
+    backgroundcolor : str, optional
+        Background color of boxes, by default 'black'
+    color : str, optional
+        Font color, by default 'white'
+    title_kwargs : Dict, optional
+        kwargs for the `ax.set_title()` call, by default {}
+    tight_layout_kwargs : Dict, optional
+        kwargs for the `plt.tight_layout()` call, by default {}
+    """
+
+    for i, ax in enumerate(axes.flat):
+        _set_black_title_box(ax, titles[i], backgroundcolor, color, title_kwargs)
+        
+    plt.tight_layout(**tight_layout_kwargs)
+    
+    for i, ax in enumerate(axes.flat):
+        _set_black_title_box(ax, titles[i], backgroundcolor, color, title_kwargs)
+        
+        
+    return
+    
+    
+    
+    
 def scale_ax_bbox(ax: "Axes", factor: float):
     # Get the current position of the subplot
     box = ax.get_position()

plotsandgraphs/multiclass_classifier.py

@@ -54,7 +54,7 @@ def test_hist_plot():
     random_data_binary_classifier : Tuple[np.ndarray, np.ndarray]
         The simulated data.
     """
-    for num_classes in [2, 3, 4, 5, 10, 16, 25]:
+    for num_classes in [1, 2, 3, 4, 5, 10, 16, 25]:
         y_true, y_prob = random_data_multiclass_classifier(num_classes=num_classes)
         print(TEST_RESULTS_PATH)
         multiclass.plot_y_prob_histogram(y_true=y_true, y_prob=y_prob, save_fig_path=TEST_RESULTS_PATH / f"histogram_{num_classes}_classes.png")